Cis- and trans-acting Influences on Telomeric Position Effect in Drosophila melanogaster Detected With a Subterminal Transgene
a Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709-2233,b Developmental Biology Center, University of California, Irvine, California 92697ayn, http://www.100md.com
c Division of Evolutionary Theory, Institute of Science and Technology History, Russian Academy of Sciences, Saint Petersburg 199034, Russiaayn, http://www.100md.com
ABSTRACTayn, http://www.100md.com
One model of telomeric position effect (TPE) in Drosophila melanogaster proposes that reporter genes in the vicinity of telomeres are repressed by subterminal telomere-associated sequences (TAS) and that variegation of these genes is the result of competition between the repressive effects of TAS and the stimulating effects of promoters in the terminal HeT-A transposon array. The data presented here support this model, but also suggest that TPE is more complex. Activity of a telomeric white reporter gene increases in response to deletion of some or all of the TAS on the homolog. Only transgenes next to fairly long HeT-A arrays respond to this trans-interaction. HeT-A arrays of 6–18 kb respond by increasing the number of dark spots on the eye, while longer arrays increase the background eye color or increase the number of spots sufficiently to cause them to merge. Thus, expression of a subtelomeric reporter gene is influenced by the telomere structure in cis and trans. We propose that the forces involved in telomere length regulation in Drosophila are the underlying forces that manifest themselves as TPE. In the wild-type telomere TAS may play an important role in controlling telomere elongation by repressing HeT-A promoter activity. Modulation of this repression by the homolog may thus regulate telomere elongation.
THE structure of the terminal DNA array at telomeres in Drosophila melanogaster differs significantly from that of yeast and most other eukaryotes (MASON and BIESSMANN 1995 ). Drosophila telomeres do not possess arrays of simple repeats that are generated by telomerase. Instead, Drosophila maintains its telomeres by transposition of specific non-long-terminal-repeat retrotransposons, i.e., HeT-A and TART, to chromosome ends. Both of these elements have unusually long 3' untranslated regions (UTRs), which encompass approximately one-half of the element. At least 600 bp of HeT-A near the oligo(A) tail contain promoter activity when tested with a lacZ reporter in a transient expression assay using tissue culture cells (DANILEVSKAYA et al. 1997 ), and, in vivo, 400 bp of the 3' end of HeT-A are sufficient to increase yellow expression at the tip of a terminally deficient chromosome (KAHN et al. 2000 ). Proximal to the terminal retrotransposon array Drosophila telomeres carry several kilobases of complex satellites, referred to as telomere-associated sequences (TAS), which vary in sequence among telomeres, but have sequence similarities between different chromosome ends (KARPEN and SPRADLING 1992 ; WALTER et al. 1995 ).
Drosophila telomeric regions are able to repress gene activity. When inserted into a telomere, reporter genes exhibit repressed and variegated expression, referred to as telomeric position effect (TPE; GEHRING et al. 1984 ; HAZELRIGG et al. 1984 ; LEVIS et al. 1985 ; KARPEN and SPRADLING 1992 ; TOWER et al. 1993 ; ROSEMAN et al. 1995 ; WALLRATH and ELGIN 1995 ). Molecular analyses showed that these repressed transgenes have inserted within, or adjacent to, a TAS array (KARPEN and SPRADLING 1992 ; LEVIS et al. 1993 ; CRYDERMAN et al. 1999 ; GOLUBOVSKY et al. 2001 ), suggesting that the TAS regions of Drosophila telomeres are heterochromatic and that TAS plays a role in telomeric silencing (KURENOVA et al. 1998 ). To investigate cis- and trans-acting effects on TPE we used a variegating white (w) transgene in the 2L telomere, termed P{wvar} (GEHRING et al. 1984). The insertion carries a genomic w gene with its eye-specific enhancer, flanked distally by two truncated HeT-A elements and proximally by a shortened 2L TAS (GOLUBOVSKY et al. 2001 ), and is transcribed from distal to proximal. It has lost all of the distal 5' P-element sequences, and the 3' end of the first HeT-A element is attached upstream of the eye-testis enhancer. While expression of this reporter in nontelomeric positions generally gives red eyes (GEHRING et al. 1984 ), the eye color in the y1 w67c23; P{wvar} strain was originally orange, similar to wapricot, with a few small red spots. w gene expression is sensitive to molecular changes occurring distally on the same chromosome, and some variants are sensitive to alterations at the homologous telomere (GOLUBOVSKY et al. 2001 ).
Taking into account the general structure of the Drosophila telomere and the genetic behavior of variant P{wvar} chromosomes with altered HeT-A/TART arrays, we proposed a new model of TPE, the HeT-A activation model (MASON et al. 2000 ; GOLUBOVSKY et al. 2001 ), which postulates that TAS represses transcription toward the HeT-A/TART array, while the terminal HeT-A elements promote transcription toward the centromere from promoters located in their 3' noncoding regions (DANILEVSKAYA et al. 1997 ). Transcription from HeT-A promoters may partially alleviate the silencing of a downstream reporter gene, or HeT-A element that is caused by the subtelomeric satellite. A reporter gene inserted between the two arrays, or within TAS, is subject to these competing influences. Variegated expression may thus be caused by a competition between the centromere-directed "activating force" of HeT-A transcription and the "repressive force" of the TAS. Transcription is a necessary first step in transposition of a retrotransposon and for many elements is a limiting step in this process (CHABOISSIER et al. 1990 ; MCLEAN et al. 1993 ; PASYUKOVA et al. 1997 ). Thus, modulation of HeT-A transcription by TAS may be important for the regulation of telomere length.
It is formally possible that a nontelomeric master HeT-A or TART element exists, but the only full-length elements known are in telomere regions. Sequences from the HeT-A 3' UTR are found at telomeres and in centric heterochromatin, but not in euchromatin (RUBIN 1978 ; YOUNG et al. 1983 ), while sequences from the open reading frame (ORF) of HeT-A (DANILEVSKAYA et al. 1992 ) and TART (LEVIS et al. 1993 ) are found exclusively at chromosome tips. HeT-A elements that have been analyzed soon after transposition vary in sequence (BIESSMANN et al. 1994 ), indicating that a single master element does not exist. It is, thus, likely that many HeT-A elements are capable of retrotransposition, and these are in arrays adjacent to TAS./':, http://www.100md.com
The level of expression of the subtelomeric w transgene also depends on the structure of the homologous telomere. We have proposed that homologous chromosomes assess the status of their telomeres by transient interactions mediated by their TAS regions (GOLUBOVSKY et al. 2001 ). When the homologous TAS is long, the interaction is strong and silencing occurs . In some ways this interaction resembles pairing-dependent silencing (KASSIS et al. 1991 ; HENIKOFF 1997 ). If this interaction is compromised by shortened or absent TAS arrays, promoter activity of the HeT-A elements is increased. Telomeric regions with intact TAS regions repress, or fail to activate, the HeT-A promoters located on the homolog. We cannot currently distinguish trans-inactivation of HeT-A by a homologous wild-type TAS array, which is alleviated when the homologous TAS is incomplete, from trans-activation by a short or absent TAS array. Either of these mechanisms may be mediated by direct interactions between the HeT-A promoter/enhancer region and TAS on the homolog or by indirect effects resulting from TAS-TAS interactions . The molecular mechanisms mediating integrity assessment of paired TAS regions are not known, but a more detailed discussion is presented elsewhere (MASON et al. 2003 ).
fig.ommitted\:2, http://www.100md.com
Figure 1. The HeT-A activation model of telomeric position effect. (A) The model proposes that the variegation exhibited by a white gene inserted into a telomere is due to competition between the activating influence of HeT-A and the repressive influence of TAS. Telomeres associate by some means other than euchromatic homology and assess the integrity of TAS elements. Silencing is strong when the TAS array on the homologous telomere is long. The HeT-A/TART array is shown as two large arrows. Transcription is indicated by small bent arrows. (B) When a short or interrupted TAS element is identified, expression of HeT-A increases. A signal indicating a short or missing TAS element may either activate enhancers directly or suppress the cis-acting TAS repression, either of which would result in increased promoter activity of HeT-A. E, enhancers on HeT-A; P, promoters on white and HeT-A.\:2, http://www.100md.com
Here we report on an extension of these studies using secondary variants of P{wvar}. Separate fly lines (families) were established from isolated chromosomes derived from P{wvar}, and eye color changes were monitored within each family. Telomeres are dynamic, and as expected, elongation and shortening events of the terminal HeT-A/TART array occurred fairly frequently. By monitoring the ancestry of a given eye color variant and isolating the affected chromosome, we were able to trace the molecular events responsible for the eye color change. Using this regimen, several new eye color variants were isolated and characterized at the molecular level, which offered new insights into the contributions of telomeric sequences acting on TPE in cis. First, consistent with our previous results (GOLUBOVSKY et al. 2001 ), in a transgene hemizygote with a wild-type 2L telomere on the homolog, the eye color is correlated with the length of white sequence remaining in the transgene. Second, in a heterozygote with a defective or deficient 2L telomere on the homolog, a single HeT-A 3' UTR upstream of P{wvar} increases the number of dark spots, and multiple HeT-A elements appear to increase mottling to the point where the spots merge to give the eye a more uniform brown-red appearance. Third, the level of expression induced by the homologous chromosome depends on the nature of TAS in the inducing chromosome. Derivatives of P{wvar} with short TAS arrays, especially those with little or no white expression of their own, have strong effects on P{wvar} expression in trans, while chromosomes that have lost all of the TAS array have relatively weak effects on transgene expression on the homolog. Deficiencies or disruptions of TAS on the homologous telomere might disrupt a pairing-dependent repression mediated by TAS or, alternatively, induce promoter activity of a full-length HeT-A 3' UTR or inhibit the cis-silencing of this promoter.
MATERIALS AND METHODS0m)70, 百拇医药
Drosophila crosses:0m)70, 百拇医药
Drosophila stocks were maintained and crosses were performed at 25° on cornmeal-molasses medium with dry yeast added to the surface. The y1 w67c23; P{wvar} stock has been described recently (GOLUBOVSKY et al. 2001). Other genetic markers and special chromosomes are described by LINDSLEY and ZIMM 1992 and in FlyBase . Unless otherwise noted, the X chromosome in all stocks and crosses carries y1 w67c23. As noted previously, several 2L terminal deficiencies have the same effect on expression of P{wvar} variants (GOLUBOVSKY et al. 2001 ). We therefore used only one of these deficiencies, l(2)gl26, which has been described previously as l(2)glGB26 (WALTER et al. 1995 ). Eye colors were determined in young individuals, and males were aged for 3 days past eclosion for photography.0m)70, 百拇医药
Families were established and new variant chromosomes were isolated by crossing a single male with the chromosome of interest to Sco/SM1, Cy females, backcrossing F1 males to balancer females, and interbreeding Cy F2 progeny. As the new variants were first identified in heterozygotes, ">="
10 F1 males were backcrossed independently, and stocks were selected in the F3 generation on the basis of the phenotype of the homozygotes.!y%nf, 百拇医药
DNA amplification by PCR:!y%nf, 百拇医药
Polymerase chain reactions to amplify <1-kb fragments from genomic DNA were done in 50-µl reactions containing 0.5 mg of genomic DNA with 2.5 units Taq polymerase (Shuzo, Otsu, Japan) at an annealing temperature of 5°–10° below the melting temperature of the primers, with 2 min synthesis at 72°. Longer DNA fragments were amplified using the Taq-Plus long PCR system from Stratagene (La Jolla, CA), allowing appropriately longer times for extension. Amplified DNA products were tested on agarose gels and sequenced either directly after purification with Geneclean (Bio 101, Carlsbad, CA) or after cloning into pGem-T-easy (Promega, Madison, WI). The following primers (synthesized by Genosys Biotechnologies, The Woodlands, TX) were used. Primers HeT-R2, HeT-ZK1, and HeT-5' were modeled after consensus sequences from HeT-A elements using the following GenBank accession nos. . HeT-5' is positioned around the presumed ATG start codon of the ORF, HeT-ZK1 is located in the first zinc-knuckle motif of the gag-like protein. Primer HeT-L3 was synthesized according to the sequences in HeT-A elements that are located at the distal end of the P{wvar} chromosome. Nucleotide positions of the white gene primer, white-D, are indicated according to the accession number of the w gene . For approximate positions and directions of these primers, see and .
HeT-R2: 5'-CCCCAAACTCACCMCATGYAATG-3'cv, 百拇医药
fig.ommittedcv, 百拇医药
Figure 2. Flowchart of the events involved in establishing individual families from y w67c23; P{wvar} al, which carries a genomic w transgene at the telomere of 2L. (Top) A representation of the P{wvar} transgene, which is flanked proximally by TAS and distally by a short array of HeT-A elements (GOLUBOVSKY et al. 2001 ). The direction of w transcription is indicated by an arrow. E, the eye enhancer on the genomic w transgene. The single founder chromosome (i-3-2) from which all families were derived had a light-orange eye color with slight variegation. The positions and orientation of the primers HeT-R2 and white-D, which were used to amplify the DNA fragments containing the HeT-A/w junctions, are shown above the map.cv, 百拇医药
fig.ommittedcv, 百拇医药
Figure 3. Eye color phenotypes of representative P{wvar} variants. II-15-4-1 is a typical highly variegated variant. II-19-1-1 falls into the brown-red class I category. The phenotype of a brown-red class II is shown in GOLUBOVSKY et al. 2001 . "+" indicates that the homolog has a wild-type telomere. In crosses to y w67c23; Sco/SM1, both Sco and Cy flies show the same pale eye color. l(2)gl26 is a terminal deficiency that removes all of the HeT-A and TAS arrays from 2L as well as the adjacent transcribed gene. "self" indicates that the variant is homozygous. P[wvar} is a typical orange variant that has been under continual selection to maintain a phenotype as close to the original as possible.
fig.ommitted}f6|, 百拇医药
Figure 4. Positions of junctions between HeT-A elements and the 5' upstream region of the w transgene in different variant chromosomes. The vertical lines indicate the nucleotide in which the HeT-A/w junction occurs in a specific variant. Sequences above and to the left of the vertical line are deleted and replaced by HeT-A; sequences to the right are retained. The number by each vertical line notes the junction for a particular variant class as shown below. Some variants have the same HeT-A/w junctions, especially those in the same family. Some pale variants and the brown-red variant II-8 were heterogeneous, with different junctions identified in the same stock. Phenotypes are indicated as in in parentheses. 1, P{wvar} (orange); 2, I-7-1 (light orange), I-19-3 (var!!), IV-9-1 (var!!), IV-13 (light orange); 3, I-14-2#2 (pale); 4, II-5-3-1-2 (var!!), II-5-5-5 (brown-red), II-14-4-6 (brown-red), II-8#1 (brown-red), II-13-2 (brown-red); 5, IV-16-4-3 (brown-red); 6, I-12-1#3 (pale); 7, I-14-2#1 (pale); V-4-1(brown-red); 8, I-14-2#4 (pale); 9, II-8#4 (brown-red); 10, I-14-2#15 (pale); 11, I-6-2-1 (var!!); 12, II-17-3-2 (pale); 13, I-12-1#7 (pale). The region of the eye enhancer is shaded(QIAN et al. 1992 ). The minimal, downstream region with w promoter activity (KUTACH and KADONAGA 2000 ) and the start codon are also boxed and shaded. The three possible transcription start sites are boxed; they are A7460 (O'HARE et al. 1984 ), A7510 (PIRROTTA et al. 1985 ), and G7528 (FlyBase, Fban0002759). An arrow shows the primer white-D. Nucleotide positions of the w gene are according to GenBank accession no. .
fig.ommittedqw+]o$p, http://www.100md.com
Figure 5. Terminal structures of variant chromosomes. DNA was digested separately with four restriction enzymes that have known sites in the white transgene (HindIII, XhoI, SstI, NruI). The nucleotide positions of the cutting sites are shown in the map for P{wvar} at the top. Also shown are the positions of the HeT-A/w junction in P{wvar} at nucleotide 5184 and the 2.2-kb DNA fragment (probe) from the w transgene that was used as a hybridization probe on Southern blots. The length of the terminal HeT-A addition is shown for each variant, as well as the nucleotide position of the HeT-A/w junction (see ). The variants are grouped by family and eye color phenotype as homozygotes. The white-1f variant arose directly in the P{wvar} stock and not in any of the families.qw+]o$p, http://www.100md.com
fig.ommittedqw+]o$p, http://www.100md.com
Figure 6. Molecular structure of the proximal 5 kb of the terminal HeT-A addition in four variants. A map of a complete 5.8-kb HeT-A element is shown in A. The shaded line indicates the HeT-A element itself. An arrow above the element indicates the ORF encoding a gag-like protein containing three zinc-knuckle motifs (ZK). Arrowheads below the element indicate the positions and the orientation of the primers used in the amplification of the junction fragments from the variants. Numbers below the element indicate the length of constituent parts of the element. The "A" at the 3' end of the element indicates the oligo(A) tail that is used to attach to the chromosome. The arrangement of HeT-A elements at the chromosome ends of two representative highly variegated and two brown-red variants was determined by sequencing and is shown in B. The white transgene is shown as an open rectangle. The vertical number at the left end of the w gene indicates the nucleotide of the w sequence that forms the junction with HeT-A. Arrowheads at either end of the structures indicate that the sequence continues. The total length of the HeT-A addition is given on the distal end. Separate HeT-A elements in the array are indicated by changes in shading, and the sequences of the junctions are shown above the lines.
HeT-L3: 5'-CATTCTTATTGAATTTTCCTTTCATTGCAGG-3'4, 百拇医药
HeT-ZK1: 5'-GGCTTCAGGCATGCCAAAAACTCTTGC-3'4, 百拇医药
HeT-5': 5'-CAACATGTCCAYGTCCGACAACCTWTTTTCTG-3'4, 百拇医药
white-D: 5'-GCTAGGTAACGCTACAAACGGTGG-3' (nucleotides 7493–7470).4, 百拇医药
DNA sequencing and sequence analysis:4, 百拇医药
Sequences were determined by automated DNA sequencing in an ABI 3700 sequencer using the Prism Ready Reaction DyeDeoxy terminators from Applied Biosystems (Foster City, CA).4, 百拇医药
Genomic DNA isolation, field inversion gel electrophoresis, Southern blotting, and hybridizations:4, 百拇医药
These were done as described previously (GOLUBOVSKY et al. 2001 ). The 2.2-kb DNA fragment from the w transgene extending from the XhoI site at nucleotide 8925 distally to the BamHI site at nucleotide 6759 was used as hybridization probe.4, 百拇医药
RESULTS4, 百拇医药
Telomere dynamics in individual families:
To study the dynamics at the 2L telomere that is marked with the P{wvar} transgene, we established four individual lines (families) from a single founder second chromosome. This chromosome was derived from a single heterozygous P{wvar} male isolated in March 1996, as shown in . One chromosome carried a brown-red variant, which was discarded; the other, termed i-3-2, carried a light-orange variant of the transgene and was placed into homozygous stock after crossing to y w67c23; Sco/SM1. From this stock we established families I and IV, and from a pale derivative that arose spontaneously in the founder stock, families II and V .ko.o@, 百拇医药
These families were maintained over a period of 32 months, during which time ~ 100 new variants arose spontaneously and independently. As before (GOLUBOVSKY et al. 2001 ), their eye colors ranged from pure white to red. Second chromosomes from flies with eye color different from that of the founder chromosome (i.e., light orange in families I and IV and pale in families II and IV) were isolated and homozygous stocks were established. Upon further observation, it was obvious that these sublines were also unstable, producing new eye color variants, which were isolated and kept as separate stocks. Thus, the origin of a given variant can be traced back to the family founder. This is reflected in our nomenclature. The roman numeral designates the family in which the variant arose, the first Arabic number is the serial number of the original variant isolated from each family, and the following numbers represent subsequent isolation steps, with new numbers added when a new variant appeared in the purified subline. Because similar eye color variants appeared independently multiple times within each family, and because only a limited repertoire of eye colors could consistently be identified, we chose 32 representative variants for molecular analyses; these are listed in .
fig.ommittedf$7[.7, 百拇医药
Table 1. Eye color variants analyzedf$7[.7, 百拇医药
A previous report described variant telomeres derived directly from the P{wvar} telomeric transgene and classified them into five categories according to the eye color of a homozygous male (GOLUBOVSKY et al. 2001 ). Here we describe secondary variants of the same telomeric insert and follow the convention established previously for identifying them. In addition to the five categories used previously (white, pale, yellow/light orange, orange, and brown-red) we found two new categories, highly variegated (abbreviated var!!) and a second class of brown-red. The phenotype of II-15-4-1, a representative var!! variant, is shown in . When heterozygous with a wild-type chromosome, the eyes are pale, with few if any spots. When the homologous telomere is deficient, the eyes are yellow with a fairly large number of spots. The homozygote has eyes that appear under low magnification as if they were darker than eyes of the deficiency heterozygote. Under high power it is evident that the background eye color is approximately the same, but that the homozygote has an increased number (and possibly increased intensity) of dark spots. The heterozygote of II-15-4-1 with P{wvar} has orange eyes, as might be expected from previous results (GOLUBOVSKY et al. 2001 ), but with increased spot number. Another new category of P{wvar} variants, exemplified in by II-19-1-1, appears to be a typical brown-red variant when homozygous or heterozygous with P{wvar} (GOLUBOVSKY et al. 2001 ), but has pale eyes when hemizygous with a wild-type chromosome and does not respond strongly to the l(2)gl26 deficiency.
Molecular structure of variants:.5, 百拇医药
Transgene junctions: With primers from TAS and P-element sequences at the proximal side of the white transgene we verified by PCR that the w/TAS junction was unchanged from that determined in the original P{wvar} transgene and its derivatives (GOLUBOVSKY et al. 2001 ). We then determined the nucleotide position of HeT-A attachment at the distal end of the white transgene in these new variants. This was done by PCR amplification of genomic DNA using a primer (HeT-R2) located ~ 90 bp upstream of the oligo(A) tail in the 3' end of HeT-A and another (white-D) from the beginning of the first exon of the subtelomeric white gene (see ). Amplified fragments were cloned in pGEM-T and sequenced. In all eye color variants analyzed here, with the exception of the white variants, there was a HeT-A element attached with its oligo(A) tail to the white transgene. A TART element was never observed to be directly attached to w. Attachments of HeT-A occurred at many different points of the transgene, all of which are located much closer to the start of w gene transcription than in the original P{wvar} .
Most variant stocks were homogeneous, with only a single junction site. However, from some pale stocks (e.g., I-14-2 and I-12-1) multiple PCR fragments with distinct HeT-A/w junctions could be subcloned (designated I-14-2#1, #2, #4, #15, and I-12-1#3 and #7). These junction sites represent independent HeT-A transposition events, because the oligo(A) tails of the elements differ in length. The junction sites are clustered within ~ 100 bp of the start of w transcription, and the terminally attached HeT-A elements in these strains are very short (<400 bp). Thus, the heterogeneity in the pale stocks could not be distinguished phenotypically. One brown-red stock (II-8) was also heterogeneous and gave two different junction sites, designated II-8#1 and II-8#4 (positions 4 and 9 in ). Even though the two brown-red chromosomes had distinguishable length HeT-A arrays (data not shown), we made no attempt to isolate them from the stock because, as in the above-mentioned pale stocks, they did not cause distinguishable eye phenotypes.
The HeT-A/w junction of our original P{wvar} stock (GOLUBOVSKY et al. 2001 ) is shown in as position 1. It occurs at nucleotide 5184 in the w sequence and leaves the eye-testis enhancer region intact . In many of the light-orange, brown-red, and highly variegated variants in families I and IV a HeT-A element is attached with an (A)15 tail to nucleotide 6251 of w (position 2 in ), suggesting that the stocks retained the junction of the light-orange founder chromosome of these two families. Likewise, in most variants from family II the HeT-A/w junction occurs at nucleotide 7141 (position 4 in ) with an invariant (A)2 tail, suggesting that this is the original junction of the pale founder chromosome from which families II and V were derived. In these variants, the HeT-A/w junction was conserved, and changes at the 2L telomere that alter expression of the transgene occur distal to this junction. While most highly variegated stocks in family I had the typical breakpoint at nucleotide 6251, one exception (I-6-2-1) arose from a pale intermediate and consequently had a breakpoint very close to the w gene at nucleotide 7274.
Many derivatives from all four families in which the HeT-A/w junction differed from that of the original founder chromosome and became located closer to w were found . These probably arose from terminal deficiencies that deleted the entire HeT-A array at the 2L telomere, followed by the attachment of a new HeT-A to a different position in the upstream region of w. Although these junctions are all located within a small region upstream of the w transcription start site, the homozygous eye color phenotypes of these stocks differ significantly and vary from pale to brown-red with no apparent correlation with the position of the junction point. As will become evident below, the expression level of the w transgene is correlated with the length of the new HeT-A array attached at the distal end of the chromosome.?[qx&hw, 百拇医药
Mapping of the HeT-A/w junctions reveals three important features of TPE in Drosophila that were not fully described before. First, all of these eye color variants, even the pale variants, show variegation, although in pale strains the spots may be only slightly darker than the background color of the eye. Thus, the presence of the eye enhancer in the upstream region of the subtelomeric transgene (QIAN et al. 1992 ) appears not to be required for variegated expression.
Second, in all variants that show at least some eye color, a basal w promoter activity remains with the transgene (see ), since the TATA-less w gene features a downstream promoter element (KUTACH and KADONAGA 2000 ). Thus, for instance in the pale stock I-12-1#7 with very short (<400 bp) HeT-A sequences attached to the transgene (junction 13 in ), low levels of w transcription appear to be driven by this basic w promoter with little, if any, contribution from the HeT-A element promoter activity. A similar argument can be made for the other pale variants with junctions that are close to the transcription start site.}+gyp6-, 百拇医药
Third, there is little, if any, stimulating HeT-A activity when the homologous telomere is wild type. As reported earlier (GOLUBOVSKY et al. 2001 ), in the absence of a distal HeT-A element there is a correlation between the length of the w sequence upstream of the ORF and that of w expression, provided that the transgene is opposite a wild-type telomere. Comparison of the present variants that do have HeT-A elements attached to the w transgene with those reported previously indicates that HeT-A addition distal to the transgene has no effect on expression in such hemizygotes.
HeT-A array length: The contribution of distally attached HeT-A elements to w gene expression at the telomere is clearly exemplified by comparing variants with identical HeT-A/w junctions but very different eye colors in the homozygotes. For instance, the presence of <400 bp of HeT-A attached to position 7 () in variant I-14-2#1 results in pale eye color, while attachment of >30 kb of HeT-A to the same position in variant V-4-1 results in brown-red eye color (see also ). Moreover, very closely positioned HeT-A/w junctions (compare junctions at 8, 9, 10, and 11) can give rise to very different eye colors, depending on the length of the HeT-A addition in the strains .\62*[s, 百拇医药
The total lengths of the terminal HeT-A additions were determined by genomic Southern blots using four restriction enzymes (HindIII, XhoI, SstI, NruI) with known sites in the w transgene. These experiments showed that the white variants were caused by terminal deficiencies that deleted parts of the w coding region. The majority of pale variants had very short terminal HeT-A additions (<400 bp) that could not be distinguished from the position of the HeT-A/w junction as determined by PCR. Only one had an addition as long as 2 kb (II-17-3-2). Light-orange variants carried between 3 and 5 kb of terminal array. The highly variegating variants had intermediate-sized (6–18 kb) HeT-A arrays. All brown-red variants had long terminal additions >30 kb. These data confirm our previous conclusion that the longer the terminal HeT-A array length, the higher the level of expression of the subterminal w reporter gene (GOLUBOVSKY et al. 2001 ).
HeT-A array composition: We next determined the composition and arrangement of transposable elements in several variants up to 6 kb distal to w. We performed long-range PCR reactions on genomic DNA using one primer (white-D) from the w transgene and another (HeT-ZK1) modeled after the most-conserved sequence in the first zinc-knuckle of the gag-like polypeptide (). In all cases, amplified DNA fragments were sequenced at both ends to verify their identity and to obtain their location within HeT-A (see ). The PCR reactions amplified fragments of 6 kb (I-21-2-2-3, orange var!!), 5.5 kb (II-5-3-1, brown-red), and 3.5 kb (I-6-2-1, orange var!! and II-8, brown-red). Variants II-5-3-1-2 (orange var!!) and II-1-2-5-2, II-3-2-4, II-14-4-6, II-5-5-5, and II-13-2 (brown-red) amplified the same size fragment as II-5-3-1 did (data not shown), suggesting a similar HeT-A array structure near the w transgene. Since the zinc-knuckle region of the ORF is located ~ 3.5 kb upstream of the HeT-A oligo(A) tail , the two variants, I-6-2-1 and II-8, may have a full-length HeT-A element attached directly to the w transgene. This was confirmed by PCR using primers HeT-5' and white-D, which amplified a 5-kb DNA fragment in these two variants, consistent with the position of primer HeT-5' 1.5 kb farther upstream on HeT-A. This analysis, however, did not allow us to determine the structure distal to the first full-length HeT-A element. Variants I-21-2-2-3 and II-5-3-1 amplified 6- and 5.5-kb fragments, respectively, with primers white-D and HeT-ZF1, which is ~ 2 kb longer than that predicted from the position of the HeT-ZK1 primer. Indeed, a nested PCR reaction with primers HeT-R2 and HeT-L3 performed on the previously amplified fragment resulted in a small fragment, which contained the junction of two HeT-A elements as determined by sequencing. Element 2 has an oligo(A)9 tail in I-21-2-2-3 and an oligo(A)3 tail in II-5-3-1. In both cases, element 1 terminated at a position ~ 300 bp downstream of the stop codon of the ORF, although the junction between elements 1 and 2 is at a slightly different position (22 bp difference). Again, the difference in homozygous eye color phenotype is consistent with the difference in total length of the terminal addition (see ).
Genetic interactions between homologous telomeres:*d*, 百拇医药
Brown-red variants of the P{wvar} transgene express the dark eye color when the homologous telomere carries a variant of P{wvar} or a terminal deficiency, but not when the homologous telomere is wild type. To investigate this trans-interaction in more detail and to determine which sequences at the telomere might be required, we tested the variants described here and other similar variants that were not characterized molecularly, in pairwise combinations. Specifically, we tested the variants for their ability to respond to or to induce a transgene on the homolog as evidenced by eye color changes.*d*, 百拇医药
Results of these experiments are summarized in (for chromosome structures see ). When the homolog carried a transgene or a deficiency for the telomere, white variants were indifferent to any changes in the homolog, pale and light-orange variants showed only modest responses to the homolog, and highly variegated and brown-red variants responded by increased mottling or eye color darkening. Interestingly, there are different levels of activation depending on the homolog (see below). Moreover, we could distinguish two classes of brown-red variants when they were tested over the terminal deficiency l(2)gl26. Class I did not respond well to l(2)gl26 (e.g., variant II-19-1-1 in ) or to other P-element insertions (such as P{w+}39C-5; WALLRATH and ELGIN 1995 ) into the 2L telomere (see ), while class II responded strongly to all alterations at the 2L homolog.
fig.ommitted:i, 百拇医药
Table 2. Eye color phenotypes of variants in various heteroallelic combinations:i, 百拇医药
The molecular structure of the brown-red variants described here differs from those analyzed previously (GOLUBOVSKY et al. 2001 ). The latter have an ~ 50-kb-long terminal array attached to the w transgene upstream of the eye-testis enhancer (junction 1 in ), leaving the enhancer intact. These brown-red variants had orange eye color over a wild-type homolog and brown-red eye color over any other variant. By contrast, the new brown-red variants of both class I and II had ~ 30-kb-long terminal HeT-A arrays attached very close to the initiation of transcription of the white transgene, deleting the eye-testis enhancer (junctions at 4, 5, 7, and 9 in ). They had pale eye color over either a wild-type homolog or the SM1 balancer, but brown-red-to-red eye color when the homologous telomere carried any P{wvar} variant transgene.:i, 百拇医药
As brown-red variants of both classes had similar HeT-A array lengths and HeT-A/w junctions at similar positions, neither of these can explain the differences in phenotype. The two classes, however, can be distinguished by the restriction maps of the first attached HeT-A elements . Class I brown-red variants have a NruI and a HindIIII site 2 kb distal to the junction, while class II variants of both families IV and V have a XhoI site 3–4 kb from the junction. The class I variants all arose in family II and all share the same HeT-A/w junction. Therefore, they cannot be considered as independent events. Even so, it is possible that the nature or sequence of individual HeT-A elements may play a role in the ability of the HeT-A array to respond to changes on the homolog.
We tested a variety of variant transgenes to determine what makes a chromosome activate a dark-eye responsive variant ( and ). As stated above, a wild-type 2L telomere had no inducing ability for any variant; it always caused a weaker or the same expression as in the homozygous condition. Light-orange variants did not activate the original P{wvar} variant, but had some effect on brown-red and highly variegated variants. All pale and most white variants strongly enhanced the expression of the original P{wvar}, class I and class II brown-red, as well as highly variegated variants. Two different white derivatives of P{wvar} exhibited different strengths in the ability to activate a homologous transgene . Both white variants retain the same proximal w/TAS junction, as confirmed by PCR; the only difference between them is the position of the chromosome end within the w transgene (see ). In II-6-2, ~ 6–7 kb of w sequence remains, but white-1f has only ~ 1 kb of the transgene left. While variant II-6-2 and other white variants broken in the ORF (GOLUBOVSKY et al. 2001 ) strongly induce a responding brown-red variant, the white-1f variant is much weaker and resembles in its inducing ability the terminal deficiency l(2)gl26, which induced class II brown-red variants strongly, class I brown-red variants weakly, but the original P{wvar} very little, if at all (see and ). The terminal deficiency l(2)gl258 also resembles l(2)gl26 in its ability to increase expression of a brown-red variant on its homolog, even though it has regained HeT-A sequences at its terminus. Both l(2)gl terminal deficiencies lack TAS, as determined by in situ hybridization to polytene chromosomes (WALTER et al. 1995 ). The interstitial deficiency Df(2L)net78;30, which removes the l(2)gl gene and ~ 100 kb to the right (GREEN and SHEPHERD 1979 ; MECHLER et al. 1985 ), resembles a wild-type chromosome in its effect on a w transgene on the homolog.
fig.ommittedp;, 百拇医药
Figure 7. Comparison of the structure of variants with their ability to induce a brown-red variant located at the homologous telomere. (A) The map of the brown-red variant, which responds by increased w expression. The proposed end-capping complex is shown as an oval. (B) A schematic representation of the structure at the tip of 2L is given for each of the variants and deficiencies tested. The ability to induce a darker eye color in the brown-red homolog (A) is given in parentheses for each of the inducer chromosomes tested (B).p;, 百拇医药
These observations suggest that the TAS region at the homologous telomere may play a role in modulating the w transgene. To determine the length of TAS on various chromosomes with different effects on the homologous transgene, genomic DNA was digested to completion with three different four-cutter restriction enzymes (HaeIII, HhaI, HpaII) that have no site in the 2L TAS repeat (WALTER et al. 1995 ) and hybridized to a 2L TAS repeat probe. As these enzymes will cut outside of TAS, this experiment will give a maximal estimated length for TAS. shows that the 2L TAS region in the y w67c23 stock is ~ 15 kb in length and that it is shortened to ~ 10 kb in P{wvar} and in eye color variants derived from it. Variants V-4-1 and KR-3-2, a brown-red derivative described in GOLUBOVSKY et al. 2001 , are shown here. To determine the length of its TAS, the Df(2L)net78;30 deficiency was analyzed as a heterozygote with KR-3-2. Hybridization with TAS distinguishes the two chromosomes and shows the shortened KR-3-2 TAS and the apparently full-length TAS of Df(2L)net78;30 in the same lanes. The TAS regions of Df(2L)net78;30 and the Cy balancer are full length and indistinguishable in size. This result suggests that a deficiency for l(2)gl itself, or adjacent proximal sequence as in Df(2L)net78;30, does not induce brown-red P{wvar} variants to higher levels of expression and supports the idea that the length of TAS plays a role in interactions between homologs.
fig.ommitted]6t, 百拇医药
Figure 8. Autoradiograph of a Southern blot containing genomic DNA cut with three different four-cutter restriction enzymes (HaeII, HhaI, HpaII) that do not cut the TAS region, hybridized to a 6-kb EcoRI-SacI fragment consisting entirely of 2L TAS repeats (21). The size of the hybridizing genomic band represents the maximal length of TAS for each of the chromosomes tested. The size of TAS in y1 w67c23 is 15 kb, but only 10 kb in the P{wvar} derivatives V-4-1 and KR-3-2. In the heterozygote Df(2L)net78;30/KR-3-2 both chromosomes are distinguishable, showing that the subterminal deficiency Df(2L)net78;30 carries a full-length TAS.]6t, 百拇医药
Telomere interactions may be even more complex. All of the eye color variants have the same shortened TAS array, but the pale variants, which carry very little HeT-A on the chromosome end, strongly affect a transgene on the homolog. On the other hand, orange and light-orange variants with longer HeT-A arrays exhibit relatively weak effects on a homologous transgene. Moreover, the l(2)gl terminal deficiencies, which lack TAS, have only weak effects. White variants with >4 kb of w gene sequence remaining distal to TAS are strong inducers, but the white-1f variant, which resembles other white variants except that it has a very short (1 kb) w sequence, is only a weak inducer and phenotypically resembles the l(2)gl terminal deficiencies.
DISCUSSION}, 百拇医药
The stimulating role of HeT-A elements in TPE:}, 百拇医药
The present studies reveal a new class of highly variegating eye color variants that allow us to discriminate between two components of TPE: the level of background w expression in the eye and the extent of variegation. Highly variegated variants have intermediate-length HeT-A arrays, suggesting that these variants represent an intermediate step in eye color darkening between the light-orange variants with little or no HeT-A and the brown-red variants with ~ 50 kb of HeT-A and TART reported previously (GOLUBOVSKY et al. 2001 ). Moreover, the structures associated with different variegation phenotypes suggest either that a long HeT-A promoter or two tandem HeT-A promoters can counteract the repressive effect of TAS more effectively than a single truncated HeT-A promoter or that HeT-A promoters distant from the suppressive effects of TAS may be more effective at stimulating w transcription. This increased w expression in more ommatid clusters results in more mottling, rather than in an increase in the background eye color, suggesting that expression increases as a change in the probability of a stochastic event, as might be expected with the addition of discrete elements, rather than as a result of ratcheting up of a rheostat.
The brown-red variants isolated in previous experiments had long HeT-A/TART terminal additions attached to the w transgene at position 5184, leaving the eye enhancer intact (GOLUBOVSKY et al. 2001 ) and leaving open the possibility that the eye color generated by the subtelomeric transgene or the extent of variegation might be controlled by the enhancer. Variants with breakpoints very close to the transcription start site, even the pale and yellow ones, show variegation, indicating that the w enhancer is not required for mottled expression. Further, many new brown-red variants that had HeT-A/w junctions very close to the w promoter exhibit pale eyes opposite a wild-type telomere. The transition from highly variegated to brown-red eye color coincides with terminal addition, while the switch from brown-red to highly variegated coincides with the shortening of the terminal HeT-A array. Thus, the ability to increase w expression does not depend on the eye-specific enhancer. These conclusions are supported by the fact that subtelomeric insertions of a mini-white gene that lacks the enhancer also variegate (WALLRATH and ELGIN 1995 ) and are inducible (M. D. GOLUBOVSKY, H. BIESSMANN and J. M. MASON, unpublished data).
Further, variants must have a full-length, or at least a relatively long, HeT-A element to be responsive, suggesting that the sequences that cis-activate the subtelomeric w+ transgene in response to the homologous telomere are not located in the transgene itself, but on HeT-A. Since short fragments from the HeT-A 3' UTR, including the promoter, are not sufficient to respond to the homolog, we propose that the responsive element is a discrete region within HeT-A, not located in the 3' end of the UTR, that acts as an enhancer of HeT-A transcription. This putative enhancer appears to be sensitive either directly or indirectly to the nature of the homologous telomere.y3@d9/, 百拇医药
The basic w promoter is contained in a short downstream promoter element (DPE) located around the proposed transcription start sites (KUTACH and KADONAGA 2000 ). Among chromosomes in which HeT-A elements are attached very close to this promoter region, the eye color of homozygotes correlates strongly with the nature and length of the attached HeT-A elements. While we cannot formally distinguish activation of the reporter gene by the addition of HeT-A promoter/enhancer activity from activation of the reporter by removal of the chromosome end from the vicinity of the w promoter, we favor the former for the following reasons. First, in studies of a yellow gene that was placed at the X chromosome terminus by terminal deletion, inactivation of enhancers that are within ~ 4 kb of the chromosome end was observed (MIKHAILOVSKY et al. 1999 ). Removal of the chromosome end by >4 kb had no further effect, independent of the length or the sequence of the intervening DNA. The changes in w gene expression that we see are correlated with much longer stretches of DNA.
Second, very short pieces of HeT-A elements, less than the length of the HeT-A promoter, are insufficient to increase expression. Apparently, these severely truncated HeT-A elements cannot provide significant promoter or enhancer activity for the w transgene. While the chromosome end and its presumed capping complex are known to interfere with enhancer function (MIKHAILOVSKY et al. 1999 ), they do not inhibit promoters. The yellow TATA-containing promoter is active if >140 bp of DNA is located between the end of the chromosome and the yellow transcription start site, and other promoter types, such as the DPE from the w gene, the TATA-containing promoter from the eve gene, and the TATA + DPE-containing promoter from the hsp70 gene, are also functional at the end of the deficient chromosome (L. MELNIKOVA, H. BIESSMANN and P. GEORGIEV, unpublished results).#?5-)v, 百拇医药
Third, the content of the HeT-A array appears to be more important than its length. One long HeT-A element has a stronger effect on w reporter expression than an array of similar length containing multiple truncated copies of the 3' UTR, suggesting that specific sequences upstream of the promoter are needed to activate the transgene. Further, the two classes of brown-red variants that react to homologs differently, described here, are distinguished by a restriction map of the HeT-A element closest to the reporter gene, rather than by the length of the array itself.
Fourth, all of the eye color changes associated with the addition of HeT-A elements to the chromosome end depend on the condition of the homologous telomere (or, more likely, TAS). It is easier to understand changes in expression caused by disruptions or deletions of the telomere on the homolog in terms of (direct or indirect) interactions of a signal with specific sites (enhancers?) upstream of the reporter gene, rather than in terms of the homologous signal measuring the length of the HeT-A array over several kilobases.r[, 百拇医药
Effect of the homologous telomere:r[, 百拇医药
White variant II-6-2 is a stronger inducer than white-1f, even though their TAS arrays have the same length. The only detectable difference between these two variants is the position of the terminal break within the w transgene. In II-6-2, ~ 6–7 kb of w sequence remains, while white-1f has only ~ 1 kb of the transgene, which brings the end of the chromosome very near TAS. Interference of the physical end of a chromosome with the accessibility of DNA sequences may be due to a chromosome end-capping protein complex, which may be able to inactivate protein-DNA interactions at enhancers up to 4 kb away from the chromosome end (MIKHAILOVSKY et al. 1999 ). The TAS region in white-1f may be compromised in its ability to interact with the TAS on the homolog by its proximity to the chromosome terminus, which may explain why white-1f phenotypically resembles the terminal deficiencies that lack TAS altogether. This putative inactivation of TAS by a capping complex does not occur in variant II-6-2 or in other white variants (GOLUBOVSKY et al. 2001 ) in which >4 kb of w sequence separates the chromosome end from TAS.
The difference between the strong trans-effects of the white and pale variants, on the one hand, and the weak effects of the light-orange variants, on the other hand, is more difficult to understand. The presence of the w sequence distal to the shortened TAS array in white and pale variants seems to stimulate activity on the homolog. Light-orange variants, which have a longer w segment, exhibit less ability to stimulate the homolog. If the distal w sequence allows the two homologous TAS arrays to pair, the short TAS on a P{wvar} variant chromosome may be insufficient to cause trans-inactivation. Longer w sequences, possibly including the ZESTE-binding sites upstream of the ORF, may reconstitute a repressive domain. These speculations require further investigation.-0-, 百拇医药
The mechanisms responsible for heterochromatic gene silencing and variegated expression are not fully understood. Two primary models, the heterochromatic spreading model and the intranuclear compartmentalization model, have been proposed to explain these phenomena (HENIKOFF 1995 ). Either of these might be responsible for the proposed repressive effect of TAS. Interphase nuclei in some species exhibit a reproducible organization (DERNBURG et al. 1995 ; LAMOND and EARNSHAW 1998 ). In Drosophila, chromosomes in embryonic and salivary gland cells are arranged with telomeres clustered at one side and centromeres at the other side of the nucleus (FOE and ALBERTS 1985 ; HOCHSTRASSER et al. 1986 ), and individual chromosome arms occupy specific regions of the nucleus (MATHOG et al. 1984 ; FOE and ALBERTS 1985 ). The nuclear position of a specific locus on a minichromosome relative to a heterochromatin domain may be determined by the structure of the chromosome itself, including the presence of an intact telomere region, or by the presence of an intact telomere on the homolog (DONALDSON and KARPEN 1997 ). Loss of the telomere region from the left end of Dp(1;f)1187 increased the variegation of a nearby yellow gene. This was termed terminal-deficiency-associated position-effect variegation (TDA-PEV). The observation that many of the suppressors of TDA-PEV are also suppressors of PEV suggests that this phenomenon is associated with centric heterochromatin, rather than with telomeric silencing, and that the trans-suppression induced by the homolog is due to a change in nuclear position (DONALDSON et al. 2002 ). The trans-suppression of telomeric silencing that we see may also result from changes in nuclear position that depend on the integrity of the homologous TAS region.
Role of the capping complex:.l1elhu, 百拇医药
The heterochromatin protein, HP1, product of the Su(var)205 gene, is located primarily in centric heterochromatin and on the fourth chromosome; it is also found at chromosome ends in Drosophila, independent of the presence of either the HeT-A/TART or the TAS arrays (FANTI et al. 1998 ; SIRIACO et al. 2002 ). Frequent telomere-telomere attachments during mitosis and meiosis in homozygous Su(var)205 mutants suggest a role in telomere capping (FANTI et al. 1998 ). As HP1 has no direct DNA-binding ability itself, we may postulate that an unidentified telomere-binding protein recruits HP1 to the chromosome end. One candidate for this recruitment may be HOAP (SHAREEF et al. 2001 ), as in caravaggio mutants that lack full-length HOAP, HP1 levels are reduced at diploid chromosome ends (CENCI et al. 2003 ), and HP1 appears absent from polytene chromosome tips (M. GATTI, personal communication). In heterozygous HP1 mutants the transposition frequency of HeT-A and TART elements to broken chromosome ends is increased 100-fold (SAVITSKY et al. 2002 ), but it is unclear whether the increased transposition rate is due to a failure in capping efficacy, making the chromosome end more accessible to retrotransposons, or to a derepression of HeT-A promoters. Nor is it clear whether the increase in HeT-A transcript level observed in these mutants is a cause or a result of the long HeT-A array. However, while Su(var)205 mutations are suppressors of centromeric position-effect variegation (EISSENBERG et al. 1990 ), they do not affect telomeric silencing (WALLRATH and ELGIN 1995 ), suggesting that HP1 is not a component of a potential TAS-binding protein complex responsible for silencing at telomeres (KURENOVA et al. 1998 ; MASON et al. 2000 , MASON et al. 2003 ), and are not responsible for HeT-A transcription. Similarly, a mutation in the gene caravaggio, encoding HOAP, has no effect on TPE using a 2L mini-white transgene (M. GATTI, personal communication). It is possible, therefore, to hypothesize two independent telomere-binding complexes in Drosophila: a capping complex including the HP1 and HOAP proteins and a heterochromatic complex initiated at TAS. Whether or not these two complexes interact with each other needs to be investigated.
Conclusion:hs, 百拇医药
Our model of TPE is based on competition between activation by the modulation of the HeT-A promoters and repression by the subtelomeric TAS. In this aspect it is similar to other PEV systems, for which a balance may exist between negative factors that promote the formation of condensed heterochromatin and positively acting enhancers and promoters that antagonize heterochromatic silencing (APARICIO and GOTTSCHLING 1994 ; WALTERS et al. 1996 ; ZHUMA et al. 1999 ; AHMAD and HENIKOFF 2001 ; MARTIN 2001 ; DILLON and FESTENSTEIN 2002 ). Our model emphasizes the interactions between HeT-A and TAS in cis as well as in trans. These interactions are detectable by the presence of a subtelomeric reporter gene that responds to the activating and repressing forces that occur normally in Drosophila telomeres. It is likely that in the absence of a reporter the same mechanisms are at work. Thus, the reporter acts as a surrogate for HeT-A activity, and the model describes a mechanism for the genetic regulation of HeT-A transcription and, probably as a result, HeT-A transposition and telomere elongation. The present data support the model in two respects. First, the white gene enhancer and ZESTE-binding sites that overlap the enhancer are not necessary for variegation of the telomeric transgene, since they can be deleted with no effect on variegation. Second, the data suggest the presence of an element that responds to the homologous TAS array, possibly indirectly, and that maps to HeT-A elements in cis to the transgene. This responsive element appears to be separable from and 5' to the HeT-A promoter. A key point of the model is the link between the quality and quantity of subtelomeric repeats and the telomere elongation mechanism. A similar influence of subtelomeric repeats on telomere elongation by telomerase has been documented in Saccharomyces cerevisiae (CRAVEN and PETES 1999 ).
ACKNOWLEDGMENTSp, http://www.100md.com
We thank Leila Bozorgnia, Aneeta Maheshwari, and Hoang Nguyen for help with the molecular analyses and Dr. Marika Walter for many discussions. Part of the work was supported by the U.S. Public Health Service grant GM-56729 to H.B.p, http://www.100md.com
Manuscript received August 2, 2002; Accepted for publication December 11, 2002.p, http://www.100md.com
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c Division of Evolutionary Theory, Institute of Science and Technology History, Russian Academy of Sciences, Saint Petersburg 199034, Russiaayn, http://www.100md.com
ABSTRACTayn, http://www.100md.com
One model of telomeric position effect (TPE) in Drosophila melanogaster proposes that reporter genes in the vicinity of telomeres are repressed by subterminal telomere-associated sequences (TAS) and that variegation of these genes is the result of competition between the repressive effects of TAS and the stimulating effects of promoters in the terminal HeT-A transposon array. The data presented here support this model, but also suggest that TPE is more complex. Activity of a telomeric white reporter gene increases in response to deletion of some or all of the TAS on the homolog. Only transgenes next to fairly long HeT-A arrays respond to this trans-interaction. HeT-A arrays of 6–18 kb respond by increasing the number of dark spots on the eye, while longer arrays increase the background eye color or increase the number of spots sufficiently to cause them to merge. Thus, expression of a subtelomeric reporter gene is influenced by the telomere structure in cis and trans. We propose that the forces involved in telomere length regulation in Drosophila are the underlying forces that manifest themselves as TPE. In the wild-type telomere TAS may play an important role in controlling telomere elongation by repressing HeT-A promoter activity. Modulation of this repression by the homolog may thus regulate telomere elongation.
THE structure of the terminal DNA array at telomeres in Drosophila melanogaster differs significantly from that of yeast and most other eukaryotes (MASON and BIESSMANN 1995 ). Drosophila telomeres do not possess arrays of simple repeats that are generated by telomerase. Instead, Drosophila maintains its telomeres by transposition of specific non-long-terminal-repeat retrotransposons, i.e., HeT-A and TART, to chromosome ends. Both of these elements have unusually long 3' untranslated regions (UTRs), which encompass approximately one-half of the element. At least 600 bp of HeT-A near the oligo(A) tail contain promoter activity when tested with a lacZ reporter in a transient expression assay using tissue culture cells (DANILEVSKAYA et al. 1997 ), and, in vivo, 400 bp of the 3' end of HeT-A are sufficient to increase yellow expression at the tip of a terminally deficient chromosome (KAHN et al. 2000 ). Proximal to the terminal retrotransposon array Drosophila telomeres carry several kilobases of complex satellites, referred to as telomere-associated sequences (TAS), which vary in sequence among telomeres, but have sequence similarities between different chromosome ends (KARPEN and SPRADLING 1992 ; WALTER et al. 1995 ).
Drosophila telomeric regions are able to repress gene activity. When inserted into a telomere, reporter genes exhibit repressed and variegated expression, referred to as telomeric position effect (TPE; GEHRING et al. 1984 ; HAZELRIGG et al. 1984 ; LEVIS et al. 1985 ; KARPEN and SPRADLING 1992 ; TOWER et al. 1993 ; ROSEMAN et al. 1995 ; WALLRATH and ELGIN 1995 ). Molecular analyses showed that these repressed transgenes have inserted within, or adjacent to, a TAS array (KARPEN and SPRADLING 1992 ; LEVIS et al. 1993 ; CRYDERMAN et al. 1999 ; GOLUBOVSKY et al. 2001 ), suggesting that the TAS regions of Drosophila telomeres are heterochromatic and that TAS plays a role in telomeric silencing (KURENOVA et al. 1998 ). To investigate cis- and trans-acting effects on TPE we used a variegating white (w) transgene in the 2L telomere, termed P{wvar} (GEHRING et al. 1984). The insertion carries a genomic w gene with its eye-specific enhancer, flanked distally by two truncated HeT-A elements and proximally by a shortened 2L TAS (GOLUBOVSKY et al. 2001 ), and is transcribed from distal to proximal. It has lost all of the distal 5' P-element sequences, and the 3' end of the first HeT-A element is attached upstream of the eye-testis enhancer. While expression of this reporter in nontelomeric positions generally gives red eyes (GEHRING et al. 1984 ), the eye color in the y1 w67c23; P{wvar} strain was originally orange, similar to wapricot, with a few small red spots. w gene expression is sensitive to molecular changes occurring distally on the same chromosome, and some variants are sensitive to alterations at the homologous telomere (GOLUBOVSKY et al. 2001 ).
Taking into account the general structure of the Drosophila telomere and the genetic behavior of variant P{wvar} chromosomes with altered HeT-A/TART arrays, we proposed a new model of TPE, the HeT-A activation model (MASON et al. 2000 ; GOLUBOVSKY et al. 2001 ), which postulates that TAS represses transcription toward the HeT-A/TART array, while the terminal HeT-A elements promote transcription toward the centromere from promoters located in their 3' noncoding regions (DANILEVSKAYA et al. 1997 ). Transcription from HeT-A promoters may partially alleviate the silencing of a downstream reporter gene, or HeT-A element that is caused by the subtelomeric satellite. A reporter gene inserted between the two arrays, or within TAS, is subject to these competing influences. Variegated expression may thus be caused by a competition between the centromere-directed "activating force" of HeT-A transcription and the "repressive force" of the TAS. Transcription is a necessary first step in transposition of a retrotransposon and for many elements is a limiting step in this process (CHABOISSIER et al. 1990 ; MCLEAN et al. 1993 ; PASYUKOVA et al. 1997 ). Thus, modulation of HeT-A transcription by TAS may be important for the regulation of telomere length.
It is formally possible that a nontelomeric master HeT-A or TART element exists, but the only full-length elements known are in telomere regions. Sequences from the HeT-A 3' UTR are found at telomeres and in centric heterochromatin, but not in euchromatin (RUBIN 1978 ; YOUNG et al. 1983 ), while sequences from the open reading frame (ORF) of HeT-A (DANILEVSKAYA et al. 1992 ) and TART (LEVIS et al. 1993 ) are found exclusively at chromosome tips. HeT-A elements that have been analyzed soon after transposition vary in sequence (BIESSMANN et al. 1994 ), indicating that a single master element does not exist. It is, thus, likely that many HeT-A elements are capable of retrotransposition, and these are in arrays adjacent to TAS./':, http://www.100md.com
The level of expression of the subtelomeric w transgene also depends on the structure of the homologous telomere. We have proposed that homologous chromosomes assess the status of their telomeres by transient interactions mediated by their TAS regions (GOLUBOVSKY et al. 2001 ). When the homologous TAS is long, the interaction is strong and silencing occurs . In some ways this interaction resembles pairing-dependent silencing (KASSIS et al. 1991 ; HENIKOFF 1997 ). If this interaction is compromised by shortened or absent TAS arrays, promoter activity of the HeT-A elements is increased. Telomeric regions with intact TAS regions repress, or fail to activate, the HeT-A promoters located on the homolog. We cannot currently distinguish trans-inactivation of HeT-A by a homologous wild-type TAS array, which is alleviated when the homologous TAS is incomplete, from trans-activation by a short or absent TAS array. Either of these mechanisms may be mediated by direct interactions between the HeT-A promoter/enhancer region and TAS on the homolog or by indirect effects resulting from TAS-TAS interactions . The molecular mechanisms mediating integrity assessment of paired TAS regions are not known, but a more detailed discussion is presented elsewhere (MASON et al. 2003 ).
fig.ommitted\:2, http://www.100md.com
Figure 1. The HeT-A activation model of telomeric position effect. (A) The model proposes that the variegation exhibited by a white gene inserted into a telomere is due to competition between the activating influence of HeT-A and the repressive influence of TAS. Telomeres associate by some means other than euchromatic homology and assess the integrity of TAS elements. Silencing is strong when the TAS array on the homologous telomere is long. The HeT-A/TART array is shown as two large arrows. Transcription is indicated by small bent arrows. (B) When a short or interrupted TAS element is identified, expression of HeT-A increases. A signal indicating a short or missing TAS element may either activate enhancers directly or suppress the cis-acting TAS repression, either of which would result in increased promoter activity of HeT-A. E, enhancers on HeT-A; P, promoters on white and HeT-A.\:2, http://www.100md.com
Here we report on an extension of these studies using secondary variants of P{wvar}. Separate fly lines (families) were established from isolated chromosomes derived from P{wvar}, and eye color changes were monitored within each family. Telomeres are dynamic, and as expected, elongation and shortening events of the terminal HeT-A/TART array occurred fairly frequently. By monitoring the ancestry of a given eye color variant and isolating the affected chromosome, we were able to trace the molecular events responsible for the eye color change. Using this regimen, several new eye color variants were isolated and characterized at the molecular level, which offered new insights into the contributions of telomeric sequences acting on TPE in cis. First, consistent with our previous results (GOLUBOVSKY et al. 2001 ), in a transgene hemizygote with a wild-type 2L telomere on the homolog, the eye color is correlated with the length of white sequence remaining in the transgene. Second, in a heterozygote with a defective or deficient 2L telomere on the homolog, a single HeT-A 3' UTR upstream of P{wvar} increases the number of dark spots, and multiple HeT-A elements appear to increase mottling to the point where the spots merge to give the eye a more uniform brown-red appearance. Third, the level of expression induced by the homologous chromosome depends on the nature of TAS in the inducing chromosome. Derivatives of P{wvar} with short TAS arrays, especially those with little or no white expression of their own, have strong effects on P{wvar} expression in trans, while chromosomes that have lost all of the TAS array have relatively weak effects on transgene expression on the homolog. Deficiencies or disruptions of TAS on the homologous telomere might disrupt a pairing-dependent repression mediated by TAS or, alternatively, induce promoter activity of a full-length HeT-A 3' UTR or inhibit the cis-silencing of this promoter.
MATERIALS AND METHODS0m)70, 百拇医药
Drosophila crosses:0m)70, 百拇医药
Drosophila stocks were maintained and crosses were performed at 25° on cornmeal-molasses medium with dry yeast added to the surface. The y1 w67c23; P{wvar} stock has been described recently (GOLUBOVSKY et al. 2001). Other genetic markers and special chromosomes are described by LINDSLEY and ZIMM 1992 and in FlyBase . Unless otherwise noted, the X chromosome in all stocks and crosses carries y1 w67c23. As noted previously, several 2L terminal deficiencies have the same effect on expression of P{wvar} variants (GOLUBOVSKY et al. 2001 ). We therefore used only one of these deficiencies, l(2)gl26, which has been described previously as l(2)glGB26 (WALTER et al. 1995 ). Eye colors were determined in young individuals, and males were aged for 3 days past eclosion for photography.0m)70, 百拇医药
Families were established and new variant chromosomes were isolated by crossing a single male with the chromosome of interest to Sco/SM1, Cy females, backcrossing F1 males to balancer females, and interbreeding Cy F2 progeny. As the new variants were first identified in heterozygotes, ">="
10 F1 males were backcrossed independently, and stocks were selected in the F3 generation on the basis of the phenotype of the homozygotes.!y%nf, 百拇医药
DNA amplification by PCR:!y%nf, 百拇医药
Polymerase chain reactions to amplify <1-kb fragments from genomic DNA were done in 50-µl reactions containing 0.5 mg of genomic DNA with 2.5 units Taq polymerase (Shuzo, Otsu, Japan) at an annealing temperature of 5°–10° below the melting temperature of the primers, with 2 min synthesis at 72°. Longer DNA fragments were amplified using the Taq-Plus long PCR system from Stratagene (La Jolla, CA), allowing appropriately longer times for extension. Amplified DNA products were tested on agarose gels and sequenced either directly after purification with Geneclean (Bio 101, Carlsbad, CA) or after cloning into pGem-T-easy (Promega, Madison, WI). The following primers (synthesized by Genosys Biotechnologies, The Woodlands, TX) were used. Primers HeT-R2, HeT-ZK1, and HeT-5' were modeled after consensus sequences from HeT-A elements using the following GenBank accession nos. . HeT-5' is positioned around the presumed ATG start codon of the ORF, HeT-ZK1 is located in the first zinc-knuckle motif of the gag-like protein. Primer HeT-L3 was synthesized according to the sequences in HeT-A elements that are located at the distal end of the P{wvar} chromosome. Nucleotide positions of the white gene primer, white-D, are indicated according to the accession number of the w gene . For approximate positions and directions of these primers, see and .
HeT-R2: 5'-CCCCAAACTCACCMCATGYAATG-3'cv, 百拇医药
fig.ommittedcv, 百拇医药
Figure 2. Flowchart of the events involved in establishing individual families from y w67c23; P{wvar} al, which carries a genomic w transgene at the telomere of 2L. (Top) A representation of the P{wvar} transgene, which is flanked proximally by TAS and distally by a short array of HeT-A elements (GOLUBOVSKY et al. 2001 ). The direction of w transcription is indicated by an arrow. E, the eye enhancer on the genomic w transgene. The single founder chromosome (i-3-2) from which all families were derived had a light-orange eye color with slight variegation. The positions and orientation of the primers HeT-R2 and white-D, which were used to amplify the DNA fragments containing the HeT-A/w junctions, are shown above the map.cv, 百拇医药
fig.ommittedcv, 百拇医药
Figure 3. Eye color phenotypes of representative P{wvar} variants. II-15-4-1 is a typical highly variegated variant. II-19-1-1 falls into the brown-red class I category. The phenotype of a brown-red class II is shown in GOLUBOVSKY et al. 2001 . "+" indicates that the homolog has a wild-type telomere. In crosses to y w67c23; Sco/SM1, both Sco and Cy flies show the same pale eye color. l(2)gl26 is a terminal deficiency that removes all of the HeT-A and TAS arrays from 2L as well as the adjacent transcribed gene. "self" indicates that the variant is homozygous. P[wvar} is a typical orange variant that has been under continual selection to maintain a phenotype as close to the original as possible.
fig.ommitted}f6|, 百拇医药
Figure 4. Positions of junctions between HeT-A elements and the 5' upstream region of the w transgene in different variant chromosomes. The vertical lines indicate the nucleotide in which the HeT-A/w junction occurs in a specific variant. Sequences above and to the left of the vertical line are deleted and replaced by HeT-A; sequences to the right are retained. The number by each vertical line notes the junction for a particular variant class as shown below. Some variants have the same HeT-A/w junctions, especially those in the same family. Some pale variants and the brown-red variant II-8 were heterogeneous, with different junctions identified in the same stock. Phenotypes are indicated as in in parentheses. 1, P{wvar} (orange); 2, I-7-1 (light orange), I-19-3 (var!!), IV-9-1 (var!!), IV-13 (light orange); 3, I-14-2#2 (pale); 4, II-5-3-1-2 (var!!), II-5-5-5 (brown-red), II-14-4-6 (brown-red), II-8#1 (brown-red), II-13-2 (brown-red); 5, IV-16-4-3 (brown-red); 6, I-12-1#3 (pale); 7, I-14-2#1 (pale); V-4-1(brown-red); 8, I-14-2#4 (pale); 9, II-8#4 (brown-red); 10, I-14-2#15 (pale); 11, I-6-2-1 (var!!); 12, II-17-3-2 (pale); 13, I-12-1#7 (pale). The region of the eye enhancer is shaded(QIAN et al. 1992 ). The minimal, downstream region with w promoter activity (KUTACH and KADONAGA 2000 ) and the start codon are also boxed and shaded. The three possible transcription start sites are boxed; they are A7460 (O'HARE et al. 1984 ), A7510 (PIRROTTA et al. 1985 ), and G7528 (FlyBase, Fban0002759). An arrow shows the primer white-D. Nucleotide positions of the w gene are according to GenBank accession no. .
fig.ommittedqw+]o$p, http://www.100md.com
Figure 5. Terminal structures of variant chromosomes. DNA was digested separately with four restriction enzymes that have known sites in the white transgene (HindIII, XhoI, SstI, NruI). The nucleotide positions of the cutting sites are shown in the map for P{wvar} at the top. Also shown are the positions of the HeT-A/w junction in P{wvar} at nucleotide 5184 and the 2.2-kb DNA fragment (probe) from the w transgene that was used as a hybridization probe on Southern blots. The length of the terminal HeT-A addition is shown for each variant, as well as the nucleotide position of the HeT-A/w junction (see ). The variants are grouped by family and eye color phenotype as homozygotes. The white-1f variant arose directly in the P{wvar} stock and not in any of the families.qw+]o$p, http://www.100md.com
fig.ommittedqw+]o$p, http://www.100md.com
Figure 6. Molecular structure of the proximal 5 kb of the terminal HeT-A addition in four variants. A map of a complete 5.8-kb HeT-A element is shown in A. The shaded line indicates the HeT-A element itself. An arrow above the element indicates the ORF encoding a gag-like protein containing three zinc-knuckle motifs (ZK). Arrowheads below the element indicate the positions and the orientation of the primers used in the amplification of the junction fragments from the variants. Numbers below the element indicate the length of constituent parts of the element. The "A" at the 3' end of the element indicates the oligo(A) tail that is used to attach to the chromosome. The arrangement of HeT-A elements at the chromosome ends of two representative highly variegated and two brown-red variants was determined by sequencing and is shown in B. The white transgene is shown as an open rectangle. The vertical number at the left end of the w gene indicates the nucleotide of the w sequence that forms the junction with HeT-A. Arrowheads at either end of the structures indicate that the sequence continues. The total length of the HeT-A addition is given on the distal end. Separate HeT-A elements in the array are indicated by changes in shading, and the sequences of the junctions are shown above the lines.
HeT-L3: 5'-CATTCTTATTGAATTTTCCTTTCATTGCAGG-3'4, 百拇医药
HeT-ZK1: 5'-GGCTTCAGGCATGCCAAAAACTCTTGC-3'4, 百拇医药
HeT-5': 5'-CAACATGTCCAYGTCCGACAACCTWTTTTCTG-3'4, 百拇医药
white-D: 5'-GCTAGGTAACGCTACAAACGGTGG-3' (nucleotides 7493–7470).4, 百拇医药
DNA sequencing and sequence analysis:4, 百拇医药
Sequences were determined by automated DNA sequencing in an ABI 3700 sequencer using the Prism Ready Reaction DyeDeoxy terminators from Applied Biosystems (Foster City, CA).4, 百拇医药
Genomic DNA isolation, field inversion gel electrophoresis, Southern blotting, and hybridizations:4, 百拇医药
These were done as described previously (GOLUBOVSKY et al. 2001 ). The 2.2-kb DNA fragment from the w transgene extending from the XhoI site at nucleotide 8925 distally to the BamHI site at nucleotide 6759 was used as hybridization probe.4, 百拇医药
RESULTS4, 百拇医药
Telomere dynamics in individual families:
To study the dynamics at the 2L telomere that is marked with the P{wvar} transgene, we established four individual lines (families) from a single founder second chromosome. This chromosome was derived from a single heterozygous P{wvar} male isolated in March 1996, as shown in . One chromosome carried a brown-red variant, which was discarded; the other, termed i-3-2, carried a light-orange variant of the transgene and was placed into homozygous stock after crossing to y w67c23; Sco/SM1. From this stock we established families I and IV, and from a pale derivative that arose spontaneously in the founder stock, families II and V .ko.o@, 百拇医药
These families were maintained over a period of 32 months, during which time ~ 100 new variants arose spontaneously and independently. As before (GOLUBOVSKY et al. 2001 ), their eye colors ranged from pure white to red. Second chromosomes from flies with eye color different from that of the founder chromosome (i.e., light orange in families I and IV and pale in families II and IV) were isolated and homozygous stocks were established. Upon further observation, it was obvious that these sublines were also unstable, producing new eye color variants, which were isolated and kept as separate stocks. Thus, the origin of a given variant can be traced back to the family founder. This is reflected in our nomenclature. The roman numeral designates the family in which the variant arose, the first Arabic number is the serial number of the original variant isolated from each family, and the following numbers represent subsequent isolation steps, with new numbers added when a new variant appeared in the purified subline. Because similar eye color variants appeared independently multiple times within each family, and because only a limited repertoire of eye colors could consistently be identified, we chose 32 representative variants for molecular analyses; these are listed in .
fig.ommittedf$7[.7, 百拇医药
Table 1. Eye color variants analyzedf$7[.7, 百拇医药
A previous report described variant telomeres derived directly from the P{wvar} telomeric transgene and classified them into five categories according to the eye color of a homozygous male (GOLUBOVSKY et al. 2001 ). Here we describe secondary variants of the same telomeric insert and follow the convention established previously for identifying them. In addition to the five categories used previously (white, pale, yellow/light orange, orange, and brown-red) we found two new categories, highly variegated (abbreviated var!!) and a second class of brown-red. The phenotype of II-15-4-1, a representative var!! variant, is shown in . When heterozygous with a wild-type chromosome, the eyes are pale, with few if any spots. When the homologous telomere is deficient, the eyes are yellow with a fairly large number of spots. The homozygote has eyes that appear under low magnification as if they were darker than eyes of the deficiency heterozygote. Under high power it is evident that the background eye color is approximately the same, but that the homozygote has an increased number (and possibly increased intensity) of dark spots. The heterozygote of II-15-4-1 with P{wvar} has orange eyes, as might be expected from previous results (GOLUBOVSKY et al. 2001 ), but with increased spot number. Another new category of P{wvar} variants, exemplified in by II-19-1-1, appears to be a typical brown-red variant when homozygous or heterozygous with P{wvar} (GOLUBOVSKY et al. 2001 ), but has pale eyes when hemizygous with a wild-type chromosome and does not respond strongly to the l(2)gl26 deficiency.
Molecular structure of variants:.5, 百拇医药
Transgene junctions: With primers from TAS and P-element sequences at the proximal side of the white transgene we verified by PCR that the w/TAS junction was unchanged from that determined in the original P{wvar} transgene and its derivatives (GOLUBOVSKY et al. 2001 ). We then determined the nucleotide position of HeT-A attachment at the distal end of the white transgene in these new variants. This was done by PCR amplification of genomic DNA using a primer (HeT-R2) located ~ 90 bp upstream of the oligo(A) tail in the 3' end of HeT-A and another (white-D) from the beginning of the first exon of the subtelomeric white gene (see ). Amplified fragments were cloned in pGEM-T and sequenced. In all eye color variants analyzed here, with the exception of the white variants, there was a HeT-A element attached with its oligo(A) tail to the white transgene. A TART element was never observed to be directly attached to w. Attachments of HeT-A occurred at many different points of the transgene, all of which are located much closer to the start of w gene transcription than in the original P{wvar} .
Most variant stocks were homogeneous, with only a single junction site. However, from some pale stocks (e.g., I-14-2 and I-12-1) multiple PCR fragments with distinct HeT-A/w junctions could be subcloned (designated I-14-2#1, #2, #4, #15, and I-12-1#3 and #7). These junction sites represent independent HeT-A transposition events, because the oligo(A) tails of the elements differ in length. The junction sites are clustered within ~ 100 bp of the start of w transcription, and the terminally attached HeT-A elements in these strains are very short (<400 bp). Thus, the heterogeneity in the pale stocks could not be distinguished phenotypically. One brown-red stock (II-8) was also heterogeneous and gave two different junction sites, designated II-8#1 and II-8#4 (positions 4 and 9 in ). Even though the two brown-red chromosomes had distinguishable length HeT-A arrays (data not shown), we made no attempt to isolate them from the stock because, as in the above-mentioned pale stocks, they did not cause distinguishable eye phenotypes.
The HeT-A/w junction of our original P{wvar} stock (GOLUBOVSKY et al. 2001 ) is shown in as position 1. It occurs at nucleotide 5184 in the w sequence and leaves the eye-testis enhancer region intact . In many of the light-orange, brown-red, and highly variegated variants in families I and IV a HeT-A element is attached with an (A)15 tail to nucleotide 6251 of w (position 2 in ), suggesting that the stocks retained the junction of the light-orange founder chromosome of these two families. Likewise, in most variants from family II the HeT-A/w junction occurs at nucleotide 7141 (position 4 in ) with an invariant (A)2 tail, suggesting that this is the original junction of the pale founder chromosome from which families II and V were derived. In these variants, the HeT-A/w junction was conserved, and changes at the 2L telomere that alter expression of the transgene occur distal to this junction. While most highly variegated stocks in family I had the typical breakpoint at nucleotide 6251, one exception (I-6-2-1) arose from a pale intermediate and consequently had a breakpoint very close to the w gene at nucleotide 7274.
Many derivatives from all four families in which the HeT-A/w junction differed from that of the original founder chromosome and became located closer to w were found . These probably arose from terminal deficiencies that deleted the entire HeT-A array at the 2L telomere, followed by the attachment of a new HeT-A to a different position in the upstream region of w. Although these junctions are all located within a small region upstream of the w transcription start site, the homozygous eye color phenotypes of these stocks differ significantly and vary from pale to brown-red with no apparent correlation with the position of the junction point. As will become evident below, the expression level of the w transgene is correlated with the length of the new HeT-A array attached at the distal end of the chromosome.?[qx&hw, 百拇医药
Mapping of the HeT-A/w junctions reveals three important features of TPE in Drosophila that were not fully described before. First, all of these eye color variants, even the pale variants, show variegation, although in pale strains the spots may be only slightly darker than the background color of the eye. Thus, the presence of the eye enhancer in the upstream region of the subtelomeric transgene (QIAN et al. 1992 ) appears not to be required for variegated expression.
Second, in all variants that show at least some eye color, a basal w promoter activity remains with the transgene (see ), since the TATA-less w gene features a downstream promoter element (KUTACH and KADONAGA 2000 ). Thus, for instance in the pale stock I-12-1#7 with very short (<400 bp) HeT-A sequences attached to the transgene (junction 13 in ), low levels of w transcription appear to be driven by this basic w promoter with little, if any, contribution from the HeT-A element promoter activity. A similar argument can be made for the other pale variants with junctions that are close to the transcription start site.}+gyp6-, 百拇医药
Third, there is little, if any, stimulating HeT-A activity when the homologous telomere is wild type. As reported earlier (GOLUBOVSKY et al. 2001 ), in the absence of a distal HeT-A element there is a correlation between the length of the w sequence upstream of the ORF and that of w expression, provided that the transgene is opposite a wild-type telomere. Comparison of the present variants that do have HeT-A elements attached to the w transgene with those reported previously indicates that HeT-A addition distal to the transgene has no effect on expression in such hemizygotes.
HeT-A array length: The contribution of distally attached HeT-A elements to w gene expression at the telomere is clearly exemplified by comparing variants with identical HeT-A/w junctions but very different eye colors in the homozygotes. For instance, the presence of <400 bp of HeT-A attached to position 7 () in variant I-14-2#1 results in pale eye color, while attachment of >30 kb of HeT-A to the same position in variant V-4-1 results in brown-red eye color (see also ). Moreover, very closely positioned HeT-A/w junctions (compare junctions at 8, 9, 10, and 11) can give rise to very different eye colors, depending on the length of the HeT-A addition in the strains .\62*[s, 百拇医药
The total lengths of the terminal HeT-A additions were determined by genomic Southern blots using four restriction enzymes (HindIII, XhoI, SstI, NruI) with known sites in the w transgene. These experiments showed that the white variants were caused by terminal deficiencies that deleted parts of the w coding region. The majority of pale variants had very short terminal HeT-A additions (<400 bp) that could not be distinguished from the position of the HeT-A/w junction as determined by PCR. Only one had an addition as long as 2 kb (II-17-3-2). Light-orange variants carried between 3 and 5 kb of terminal array. The highly variegating variants had intermediate-sized (6–18 kb) HeT-A arrays. All brown-red variants had long terminal additions >30 kb. These data confirm our previous conclusion that the longer the terminal HeT-A array length, the higher the level of expression of the subterminal w reporter gene (GOLUBOVSKY et al. 2001 ).
HeT-A array composition: We next determined the composition and arrangement of transposable elements in several variants up to 6 kb distal to w. We performed long-range PCR reactions on genomic DNA using one primer (white-D) from the w transgene and another (HeT-ZK1) modeled after the most-conserved sequence in the first zinc-knuckle of the gag-like polypeptide (). In all cases, amplified DNA fragments were sequenced at both ends to verify their identity and to obtain their location within HeT-A (see ). The PCR reactions amplified fragments of 6 kb (I-21-2-2-3, orange var!!), 5.5 kb (II-5-3-1, brown-red), and 3.5 kb (I-6-2-1, orange var!! and II-8, brown-red). Variants II-5-3-1-2 (orange var!!) and II-1-2-5-2, II-3-2-4, II-14-4-6, II-5-5-5, and II-13-2 (brown-red) amplified the same size fragment as II-5-3-1 did (data not shown), suggesting a similar HeT-A array structure near the w transgene. Since the zinc-knuckle region of the ORF is located ~ 3.5 kb upstream of the HeT-A oligo(A) tail , the two variants, I-6-2-1 and II-8, may have a full-length HeT-A element attached directly to the w transgene. This was confirmed by PCR using primers HeT-5' and white-D, which amplified a 5-kb DNA fragment in these two variants, consistent with the position of primer HeT-5' 1.5 kb farther upstream on HeT-A. This analysis, however, did not allow us to determine the structure distal to the first full-length HeT-A element. Variants I-21-2-2-3 and II-5-3-1 amplified 6- and 5.5-kb fragments, respectively, with primers white-D and HeT-ZF1, which is ~ 2 kb longer than that predicted from the position of the HeT-ZK1 primer. Indeed, a nested PCR reaction with primers HeT-R2 and HeT-L3 performed on the previously amplified fragment resulted in a small fragment, which contained the junction of two HeT-A elements as determined by sequencing. Element 2 has an oligo(A)9 tail in I-21-2-2-3 and an oligo(A)3 tail in II-5-3-1. In both cases, element 1 terminated at a position ~ 300 bp downstream of the stop codon of the ORF, although the junction between elements 1 and 2 is at a slightly different position (22 bp difference). Again, the difference in homozygous eye color phenotype is consistent with the difference in total length of the terminal addition (see ).
Genetic interactions between homologous telomeres:*d*, 百拇医药
Brown-red variants of the P{wvar} transgene express the dark eye color when the homologous telomere carries a variant of P{wvar} or a terminal deficiency, but not when the homologous telomere is wild type. To investigate this trans-interaction in more detail and to determine which sequences at the telomere might be required, we tested the variants described here and other similar variants that were not characterized molecularly, in pairwise combinations. Specifically, we tested the variants for their ability to respond to or to induce a transgene on the homolog as evidenced by eye color changes.*d*, 百拇医药
Results of these experiments are summarized in (for chromosome structures see ). When the homolog carried a transgene or a deficiency for the telomere, white variants were indifferent to any changes in the homolog, pale and light-orange variants showed only modest responses to the homolog, and highly variegated and brown-red variants responded by increased mottling or eye color darkening. Interestingly, there are different levels of activation depending on the homolog (see below). Moreover, we could distinguish two classes of brown-red variants when they were tested over the terminal deficiency l(2)gl26. Class I did not respond well to l(2)gl26 (e.g., variant II-19-1-1 in ) or to other P-element insertions (such as P{w+}39C-5; WALLRATH and ELGIN 1995 ) into the 2L telomere (see ), while class II responded strongly to all alterations at the 2L homolog.
fig.ommitted:i, 百拇医药
Table 2. Eye color phenotypes of variants in various heteroallelic combinations:i, 百拇医药
The molecular structure of the brown-red variants described here differs from those analyzed previously (GOLUBOVSKY et al. 2001 ). The latter have an ~ 50-kb-long terminal array attached to the w transgene upstream of the eye-testis enhancer (junction 1 in ), leaving the enhancer intact. These brown-red variants had orange eye color over a wild-type homolog and brown-red eye color over any other variant. By contrast, the new brown-red variants of both class I and II had ~ 30-kb-long terminal HeT-A arrays attached very close to the initiation of transcription of the white transgene, deleting the eye-testis enhancer (junctions at 4, 5, 7, and 9 in ). They had pale eye color over either a wild-type homolog or the SM1 balancer, but brown-red-to-red eye color when the homologous telomere carried any P{wvar} variant transgene.:i, 百拇医药
As brown-red variants of both classes had similar HeT-A array lengths and HeT-A/w junctions at similar positions, neither of these can explain the differences in phenotype. The two classes, however, can be distinguished by the restriction maps of the first attached HeT-A elements . Class I brown-red variants have a NruI and a HindIIII site 2 kb distal to the junction, while class II variants of both families IV and V have a XhoI site 3–4 kb from the junction. The class I variants all arose in family II and all share the same HeT-A/w junction. Therefore, they cannot be considered as independent events. Even so, it is possible that the nature or sequence of individual HeT-A elements may play a role in the ability of the HeT-A array to respond to changes on the homolog.
We tested a variety of variant transgenes to determine what makes a chromosome activate a dark-eye responsive variant ( and ). As stated above, a wild-type 2L telomere had no inducing ability for any variant; it always caused a weaker or the same expression as in the homozygous condition. Light-orange variants did not activate the original P{wvar} variant, but had some effect on brown-red and highly variegated variants. All pale and most white variants strongly enhanced the expression of the original P{wvar}, class I and class II brown-red, as well as highly variegated variants. Two different white derivatives of P{wvar} exhibited different strengths in the ability to activate a homologous transgene . Both white variants retain the same proximal w/TAS junction, as confirmed by PCR; the only difference between them is the position of the chromosome end within the w transgene (see ). In II-6-2, ~ 6–7 kb of w sequence remains, but white-1f has only ~ 1 kb of the transgene left. While variant II-6-2 and other white variants broken in the ORF (GOLUBOVSKY et al. 2001 ) strongly induce a responding brown-red variant, the white-1f variant is much weaker and resembles in its inducing ability the terminal deficiency l(2)gl26, which induced class II brown-red variants strongly, class I brown-red variants weakly, but the original P{wvar} very little, if at all (see and ). The terminal deficiency l(2)gl258 also resembles l(2)gl26 in its ability to increase expression of a brown-red variant on its homolog, even though it has regained HeT-A sequences at its terminus. Both l(2)gl terminal deficiencies lack TAS, as determined by in situ hybridization to polytene chromosomes (WALTER et al. 1995 ). The interstitial deficiency Df(2L)net78;30, which removes the l(2)gl gene and ~ 100 kb to the right (GREEN and SHEPHERD 1979 ; MECHLER et al. 1985 ), resembles a wild-type chromosome in its effect on a w transgene on the homolog.
fig.ommittedp;, 百拇医药
Figure 7. Comparison of the structure of variants with their ability to induce a brown-red variant located at the homologous telomere. (A) The map of the brown-red variant, which responds by increased w expression. The proposed end-capping complex is shown as an oval. (B) A schematic representation of the structure at the tip of 2L is given for each of the variants and deficiencies tested. The ability to induce a darker eye color in the brown-red homolog (A) is given in parentheses for each of the inducer chromosomes tested (B).p;, 百拇医药
These observations suggest that the TAS region at the homologous telomere may play a role in modulating the w transgene. To determine the length of TAS on various chromosomes with different effects on the homologous transgene, genomic DNA was digested to completion with three different four-cutter restriction enzymes (HaeIII, HhaI, HpaII) that have no site in the 2L TAS repeat (WALTER et al. 1995 ) and hybridized to a 2L TAS repeat probe. As these enzymes will cut outside of TAS, this experiment will give a maximal estimated length for TAS. shows that the 2L TAS region in the y w67c23 stock is ~ 15 kb in length and that it is shortened to ~ 10 kb in P{wvar} and in eye color variants derived from it. Variants V-4-1 and KR-3-2, a brown-red derivative described in GOLUBOVSKY et al. 2001 , are shown here. To determine the length of its TAS, the Df(2L)net78;30 deficiency was analyzed as a heterozygote with KR-3-2. Hybridization with TAS distinguishes the two chromosomes and shows the shortened KR-3-2 TAS and the apparently full-length TAS of Df(2L)net78;30 in the same lanes. The TAS regions of Df(2L)net78;30 and the Cy balancer are full length and indistinguishable in size. This result suggests that a deficiency for l(2)gl itself, or adjacent proximal sequence as in Df(2L)net78;30, does not induce brown-red P{wvar} variants to higher levels of expression and supports the idea that the length of TAS plays a role in interactions between homologs.
fig.ommitted]6t, 百拇医药
Figure 8. Autoradiograph of a Southern blot containing genomic DNA cut with three different four-cutter restriction enzymes (HaeII, HhaI, HpaII) that do not cut the TAS region, hybridized to a 6-kb EcoRI-SacI fragment consisting entirely of 2L TAS repeats (21). The size of the hybridizing genomic band represents the maximal length of TAS for each of the chromosomes tested. The size of TAS in y1 w67c23 is 15 kb, but only 10 kb in the P{wvar} derivatives V-4-1 and KR-3-2. In the heterozygote Df(2L)net78;30/KR-3-2 both chromosomes are distinguishable, showing that the subterminal deficiency Df(2L)net78;30 carries a full-length TAS.]6t, 百拇医药
Telomere interactions may be even more complex. All of the eye color variants have the same shortened TAS array, but the pale variants, which carry very little HeT-A on the chromosome end, strongly affect a transgene on the homolog. On the other hand, orange and light-orange variants with longer HeT-A arrays exhibit relatively weak effects on a homologous transgene. Moreover, the l(2)gl terminal deficiencies, which lack TAS, have only weak effects. White variants with >4 kb of w gene sequence remaining distal to TAS are strong inducers, but the white-1f variant, which resembles other white variants except that it has a very short (1 kb) w sequence, is only a weak inducer and phenotypically resembles the l(2)gl terminal deficiencies.
DISCUSSION}, 百拇医药
The stimulating role of HeT-A elements in TPE:}, 百拇医药
The present studies reveal a new class of highly variegating eye color variants that allow us to discriminate between two components of TPE: the level of background w expression in the eye and the extent of variegation. Highly variegated variants have intermediate-length HeT-A arrays, suggesting that these variants represent an intermediate step in eye color darkening between the light-orange variants with little or no HeT-A and the brown-red variants with ~ 50 kb of HeT-A and TART reported previously (GOLUBOVSKY et al. 2001 ). Moreover, the structures associated with different variegation phenotypes suggest either that a long HeT-A promoter or two tandem HeT-A promoters can counteract the repressive effect of TAS more effectively than a single truncated HeT-A promoter or that HeT-A promoters distant from the suppressive effects of TAS may be more effective at stimulating w transcription. This increased w expression in more ommatid clusters results in more mottling, rather than in an increase in the background eye color, suggesting that expression increases as a change in the probability of a stochastic event, as might be expected with the addition of discrete elements, rather than as a result of ratcheting up of a rheostat.
The brown-red variants isolated in previous experiments had long HeT-A/TART terminal additions attached to the w transgene at position 5184, leaving the eye enhancer intact (GOLUBOVSKY et al. 2001 ) and leaving open the possibility that the eye color generated by the subtelomeric transgene or the extent of variegation might be controlled by the enhancer. Variants with breakpoints very close to the transcription start site, even the pale and yellow ones, show variegation, indicating that the w enhancer is not required for mottled expression. Further, many new brown-red variants that had HeT-A/w junctions very close to the w promoter exhibit pale eyes opposite a wild-type telomere. The transition from highly variegated to brown-red eye color coincides with terminal addition, while the switch from brown-red to highly variegated coincides with the shortening of the terminal HeT-A array. Thus, the ability to increase w expression does not depend on the eye-specific enhancer. These conclusions are supported by the fact that subtelomeric insertions of a mini-white gene that lacks the enhancer also variegate (WALLRATH and ELGIN 1995 ) and are inducible (M. D. GOLUBOVSKY, H. BIESSMANN and J. M. MASON, unpublished data).
Further, variants must have a full-length, or at least a relatively long, HeT-A element to be responsive, suggesting that the sequences that cis-activate the subtelomeric w+ transgene in response to the homologous telomere are not located in the transgene itself, but on HeT-A. Since short fragments from the HeT-A 3' UTR, including the promoter, are not sufficient to respond to the homolog, we propose that the responsive element is a discrete region within HeT-A, not located in the 3' end of the UTR, that acts as an enhancer of HeT-A transcription. This putative enhancer appears to be sensitive either directly or indirectly to the nature of the homologous telomere.y3@d9/, 百拇医药
The basic w promoter is contained in a short downstream promoter element (DPE) located around the proposed transcription start sites (KUTACH and KADONAGA 2000 ). Among chromosomes in which HeT-A elements are attached very close to this promoter region, the eye color of homozygotes correlates strongly with the nature and length of the attached HeT-A elements. While we cannot formally distinguish activation of the reporter gene by the addition of HeT-A promoter/enhancer activity from activation of the reporter by removal of the chromosome end from the vicinity of the w promoter, we favor the former for the following reasons. First, in studies of a yellow gene that was placed at the X chromosome terminus by terminal deletion, inactivation of enhancers that are within ~ 4 kb of the chromosome end was observed (MIKHAILOVSKY et al. 1999 ). Removal of the chromosome end by >4 kb had no further effect, independent of the length or the sequence of the intervening DNA. The changes in w gene expression that we see are correlated with much longer stretches of DNA.
Second, very short pieces of HeT-A elements, less than the length of the HeT-A promoter, are insufficient to increase expression. Apparently, these severely truncated HeT-A elements cannot provide significant promoter or enhancer activity for the w transgene. While the chromosome end and its presumed capping complex are known to interfere with enhancer function (MIKHAILOVSKY et al. 1999 ), they do not inhibit promoters. The yellow TATA-containing promoter is active if >140 bp of DNA is located between the end of the chromosome and the yellow transcription start site, and other promoter types, such as the DPE from the w gene, the TATA-containing promoter from the eve gene, and the TATA + DPE-containing promoter from the hsp70 gene, are also functional at the end of the deficient chromosome (L. MELNIKOVA, H. BIESSMANN and P. GEORGIEV, unpublished results).#?5-)v, 百拇医药
Third, the content of the HeT-A array appears to be more important than its length. One long HeT-A element has a stronger effect on w reporter expression than an array of similar length containing multiple truncated copies of the 3' UTR, suggesting that specific sequences upstream of the promoter are needed to activate the transgene. Further, the two classes of brown-red variants that react to homologs differently, described here, are distinguished by a restriction map of the HeT-A element closest to the reporter gene, rather than by the length of the array itself.
Fourth, all of the eye color changes associated with the addition of HeT-A elements to the chromosome end depend on the condition of the homologous telomere (or, more likely, TAS). It is easier to understand changes in expression caused by disruptions or deletions of the telomere on the homolog in terms of (direct or indirect) interactions of a signal with specific sites (enhancers?) upstream of the reporter gene, rather than in terms of the homologous signal measuring the length of the HeT-A array over several kilobases.r[, 百拇医药
Effect of the homologous telomere:r[, 百拇医药
White variant II-6-2 is a stronger inducer than white-1f, even though their TAS arrays have the same length. The only detectable difference between these two variants is the position of the terminal break within the w transgene. In II-6-2, ~ 6–7 kb of w sequence remains, while white-1f has only ~ 1 kb of the transgene, which brings the end of the chromosome very near TAS. Interference of the physical end of a chromosome with the accessibility of DNA sequences may be due to a chromosome end-capping protein complex, which may be able to inactivate protein-DNA interactions at enhancers up to 4 kb away from the chromosome end (MIKHAILOVSKY et al. 1999 ). The TAS region in white-1f may be compromised in its ability to interact with the TAS on the homolog by its proximity to the chromosome terminus, which may explain why white-1f phenotypically resembles the terminal deficiencies that lack TAS altogether. This putative inactivation of TAS by a capping complex does not occur in variant II-6-2 or in other white variants (GOLUBOVSKY et al. 2001 ) in which >4 kb of w sequence separates the chromosome end from TAS.
The difference between the strong trans-effects of the white and pale variants, on the one hand, and the weak effects of the light-orange variants, on the other hand, is more difficult to understand. The presence of the w sequence distal to the shortened TAS array in white and pale variants seems to stimulate activity on the homolog. Light-orange variants, which have a longer w segment, exhibit less ability to stimulate the homolog. If the distal w sequence allows the two homologous TAS arrays to pair, the short TAS on a P{wvar} variant chromosome may be insufficient to cause trans-inactivation. Longer w sequences, possibly including the ZESTE-binding sites upstream of the ORF, may reconstitute a repressive domain. These speculations require further investigation.-0-, 百拇医药
The mechanisms responsible for heterochromatic gene silencing and variegated expression are not fully understood. Two primary models, the heterochromatic spreading model and the intranuclear compartmentalization model, have been proposed to explain these phenomena (HENIKOFF 1995 ). Either of these might be responsible for the proposed repressive effect of TAS. Interphase nuclei in some species exhibit a reproducible organization (DERNBURG et al. 1995 ; LAMOND and EARNSHAW 1998 ). In Drosophila, chromosomes in embryonic and salivary gland cells are arranged with telomeres clustered at one side and centromeres at the other side of the nucleus (FOE and ALBERTS 1985 ; HOCHSTRASSER et al. 1986 ), and individual chromosome arms occupy specific regions of the nucleus (MATHOG et al. 1984 ; FOE and ALBERTS 1985 ). The nuclear position of a specific locus on a minichromosome relative to a heterochromatin domain may be determined by the structure of the chromosome itself, including the presence of an intact telomere region, or by the presence of an intact telomere on the homolog (DONALDSON and KARPEN 1997 ). Loss of the telomere region from the left end of Dp(1;f)1187 increased the variegation of a nearby yellow gene. This was termed terminal-deficiency-associated position-effect variegation (TDA-PEV). The observation that many of the suppressors of TDA-PEV are also suppressors of PEV suggests that this phenomenon is associated with centric heterochromatin, rather than with telomeric silencing, and that the trans-suppression induced by the homolog is due to a change in nuclear position (DONALDSON et al. 2002 ). The trans-suppression of telomeric silencing that we see may also result from changes in nuclear position that depend on the integrity of the homologous TAS region.
Role of the capping complex:.l1elhu, 百拇医药
The heterochromatin protein, HP1, product of the Su(var)205 gene, is located primarily in centric heterochromatin and on the fourth chromosome; it is also found at chromosome ends in Drosophila, independent of the presence of either the HeT-A/TART or the TAS arrays (FANTI et al. 1998 ; SIRIACO et al. 2002 ). Frequent telomere-telomere attachments during mitosis and meiosis in homozygous Su(var)205 mutants suggest a role in telomere capping (FANTI et al. 1998 ). As HP1 has no direct DNA-binding ability itself, we may postulate that an unidentified telomere-binding protein recruits HP1 to the chromosome end. One candidate for this recruitment may be HOAP (SHAREEF et al. 2001 ), as in caravaggio mutants that lack full-length HOAP, HP1 levels are reduced at diploid chromosome ends (CENCI et al. 2003 ), and HP1 appears absent from polytene chromosome tips (M. GATTI, personal communication). In heterozygous HP1 mutants the transposition frequency of HeT-A and TART elements to broken chromosome ends is increased 100-fold (SAVITSKY et al. 2002 ), but it is unclear whether the increased transposition rate is due to a failure in capping efficacy, making the chromosome end more accessible to retrotransposons, or to a derepression of HeT-A promoters. Nor is it clear whether the increase in HeT-A transcript level observed in these mutants is a cause or a result of the long HeT-A array. However, while Su(var)205 mutations are suppressors of centromeric position-effect variegation (EISSENBERG et al. 1990 ), they do not affect telomeric silencing (WALLRATH and ELGIN 1995 ), suggesting that HP1 is not a component of a potential TAS-binding protein complex responsible for silencing at telomeres (KURENOVA et al. 1998 ; MASON et al. 2000 , MASON et al. 2003 ), and are not responsible for HeT-A transcription. Similarly, a mutation in the gene caravaggio, encoding HOAP, has no effect on TPE using a 2L mini-white transgene (M. GATTI, personal communication). It is possible, therefore, to hypothesize two independent telomere-binding complexes in Drosophila: a capping complex including the HP1 and HOAP proteins and a heterochromatic complex initiated at TAS. Whether or not these two complexes interact with each other needs to be investigated.
Conclusion:hs, 百拇医药
Our model of TPE is based on competition between activation by the modulation of the HeT-A promoters and repression by the subtelomeric TAS. In this aspect it is similar to other PEV systems, for which a balance may exist between negative factors that promote the formation of condensed heterochromatin and positively acting enhancers and promoters that antagonize heterochromatic silencing (APARICIO and GOTTSCHLING 1994 ; WALTERS et al. 1996 ; ZHUMA et al. 1999 ; AHMAD and HENIKOFF 2001 ; MARTIN 2001 ; DILLON and FESTENSTEIN 2002 ). Our model emphasizes the interactions between HeT-A and TAS in cis as well as in trans. These interactions are detectable by the presence of a subtelomeric reporter gene that responds to the activating and repressing forces that occur normally in Drosophila telomeres. It is likely that in the absence of a reporter the same mechanisms are at work. Thus, the reporter acts as a surrogate for HeT-A activity, and the model describes a mechanism for the genetic regulation of HeT-A transcription and, probably as a result, HeT-A transposition and telomere elongation. The present data support the model in two respects. First, the white gene enhancer and ZESTE-binding sites that overlap the enhancer are not necessary for variegation of the telomeric transgene, since they can be deleted with no effect on variegation. Second, the data suggest the presence of an element that responds to the homologous TAS array, possibly indirectly, and that maps to HeT-A elements in cis to the transgene. This responsive element appears to be separable from and 5' to the HeT-A promoter. A key point of the model is the link between the quality and quantity of subtelomeric repeats and the telomere elongation mechanism. A similar influence of subtelomeric repeats on telomere elongation by telomerase has been documented in Saccharomyces cerevisiae (CRAVEN and PETES 1999 ).
ACKNOWLEDGMENTSp, http://www.100md.com
We thank Leila Bozorgnia, Aneeta Maheshwari, and Hoang Nguyen for help with the molecular analyses and Dr. Marika Walter for many discussions. Part of the work was supported by the U.S. Public Health Service grant GM-56729 to H.B.p, http://www.100md.com
Manuscript received August 2, 2002; Accepted for publication December 11, 2002.p, http://www.100md.com
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