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 2005年

 
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2004年 
第1期
 
    06-10-17 Comparative Molecular Population Genetics of the Xdh Locus in the Cactophilic Sibling Species Drosophila buzzatii and D. koepferae
    06-10-17 The Mitochondrial Genome of Phoronis architecta—Comparisons Demonstrate that Phoronids Are Lophotrochozoan Protostomes
    06-10-17 Low Levels of Nucleotide Diversity in Mammalian Y Chromosomes
    06-10-17 Mutational Bias Affects Protein Evolution in Flowering Plants
    06-10-17 Sequence Determinants of Quaternary Structure in Lumazine Synthase
    06-10-17 An Analysis of Determinants of Amino Acids Substitution Rates in Bacterial Proteins
    06-10-17 Highly Heterogeneous Rates of Evolution in the SKP1 Gene Family in Plants and Animals: Functional and Evolutionary Implications
    06-10-17 Positive Darwinian Selection at the Pantophysin (Pan I) Locus in Marine Gadid Fishes
    06-10-17 Identification of Nogo-66 Receptor (NgR) and Homologous Genes in Fish
    06-10-17 Quartet Mapping and the Extent of Lateral Transfer in Bacterial Genomes
    06-10-17 Haplotype Structure and Evidence for Positive Selection at the Human IL13 Locus
    06-10-17 Temporal Patterns of Fruit Fly (Drosophila) Evolution Revealed by Mutation Clocks
    06-10-17 A Cophylogenetic Perspective of RNA–Virus Evolution
    06-10-17 Single-Molecule Analysis of the Hypermutable Tetranucleotide Repeat Locus D21S1245 Through Sperm Genotyping: A Heterogeneous Pattern of Muta
    06-10-17 Site-Specific Recombination Links the Evolution of P2-like Coliphages and Pathogenic Enterobacteria

第2期
 
    06-10-17 Heterogeneous Selection on LEGCYC Paralogs in Relation to Flower Morphology and the Phylogeny of Lupinus (Leguminosae)
    06-10-17 The Evolution of SMC Proteins: Phylogenetic Analysis and Structural Implications
    06-10-17 Evolution of Developmental Genes: Molecular Microevolution of Enhancer Sequences at the Ubx Locus in Drosophila and Its Impact on Developmen
    06-10-17 Population Genetics and Geographic Variation of Alcohol Dehydrogenase (Adh) Paralogs and Glucose-6-Phosphate Dehydrogenase (G6pd) in Drosoph
    06-10-17 Effect of Strong Directional Selection on Weakly Selected Mutations at Linked Sites: Implication for Synonymous Codon Usage
    06-10-17 Molecular Evolution of Bat Color Vision Genes
    06-10-17 Molecular Phylogeny of Euthyneura (Mollusca: Gastropoda)
    06-10-17 Adaptive Molecular Evolution of HINTW, a Female-Specific Gene in Birds
    06-10-17 Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks
    06-10-17 Identification of a Second egfr Gene in Xiphophorus Uncovers an Expansion of the Epidermal Growth Factor Receptor Family in Fish
    06-10-17 Genomic Background Drives the Divergence of Duplicated Amylase Genes at Synonymous Sites in Drosophila
    06-10-17 Birth and Evolutionary History of a Human Minisatellite
    06-10-17 Mammalian Housekeeping Genes Evolve More Slowly than Tissue-Specific Genes
    06-10-17 Ancient DNA Enables Timing of the Pleistocene Origin and Holocene Expansion of Two Adélie Penguin Lineages in Antarctica
    06-10-17 Cross-Genome Screening of Novel Sequence-Specific Non-LTR Retrotransposons: Various Multicopy RNA Genes and Microsatellites Are Selected as

第3期
 
    06-10-17 Are Combined Analyses Better Than Single Gene Phylogenies? A Case Study Using SSU rDNA and rbcL Sequence Comparisons in the Zygnematophyceae
    06-10-17 The Natural History of Nitrogen Fixation
    06-10-17 Dramatic Diversity of Ciliate Histone H4 Genes Revealed by Comparisons of Patterns of Substitutions and Paralog Divergences Among Eukaryotes
    06-10-17 The Melanocortin System in Fugu: Determination of POMC/AGRP/MCR Gene Repertoire and Synteny, As Well As Pharmacology and Anatomical Distribu
    06-10-17 Phylogenetic Dating and Characterization of Gene Duplications in Vertebrates: The Cartilaginous Fish Reference
    06-10-17 Evolution of the APETALA3 and PISTILLATA Lineages of MADS-Box–Containing Genes in the Basal Angiosperms
    06-10-17 The ingi and RIME non-LTR Retrotransposons Are Not Randomly Distributed in the Genome of Trypanosoma brucei
    06-10-17 A "Long Indel" Model For Evolutionary Sequence Alignment
    06-10-17 Origins of Bidirectional Promoters: Computational Analyses of Intergenic Distance in the Human Genome
    06-10-17 Phylogenetic Estimation of Context-Dependent Substitution Rates by Maximum Likelihood
    06-10-17 Evolution of Cryptosporidium parvum Lactate Dehydrogenase from Malate Dehydrogenase by a Very Recent Event of Gene Duplication
    06-10-17 Concerted and Nonconcerted Evolution of the Hsp70 Gene Superfamily in Two Sibling Species of Nematodes
    06-10-17 Sequential Evolution of a Symbiont Inferred From the Host: Wolbachia and Drosophila simulans
    06-10-17 Evolution of Interacting Proteins in the Mitochondrial Electron Transport System in a Marine Copepod
    06-10-17 Phylogeography and Origin of Indian Domestic Goats

第4期
 
    06-10-17 Genetic Diversity Patterns in the SR-BI/II Locus Can Be Explained by a Recent Selective Sweep
    06-10-17 The Mitochondrial Genome of the House Centipede Scutigera and the Monophyly Versus Paraphyly of Myriapods
    06-10-17 Molecular Evolution of the Phytochrome Gene Family in Sorghum: Changing Rates of Synonymous and Replacement Evolution
    06-10-17 A Test of Neutrality and Constant Population Size Based on the Mismatch Distribution
    06-10-17 Adaptive Evolution of Sperm Bindin Tracks Egg Incompatibility in Neotropical Sea Urchins of the Genus Echinometra
    06-10-17 A New Group of Tyrosine Recombinase-Encoding Retrotransposons
    06-10-17 Recent Intron Gain in Elongation Factor-1 of Colletid Bees (Hymenoptera: Colletidae)
    06-10-17 Genetic Evidence for the Coexistence of Pheromone Perception and Full Trichromatic Vision in Howler Monkeys
    06-10-17 First Application of the SINE (Short Interspersed Repetitive Element) Method to Infer Phylogenetic Relationships in Reptiles: An Example fro
    06-10-17 Bacterial Proteins Predisposed for Targeting to Mitochondria
    06-10-17 Rapid Evolution of a Pollen-Specific Oleosin-Like Gene Family from Arabidopsis thaliana and Closely Related Species
    06-10-17 Rapid Sequence Turnover at an Intergenic Locus in Drosophila
    06-10-17 Deriving the Genomic Tree of Life in the Presence of Horizontal Gene Transfer: Conditioned Reconstruction
    06-10-17 Evolution of the Multifunctional Protein Tyrosine Phosphatase Family
    06-10-17 Differential Enzyme Targeting As an Evolutionary Adaptation to Herbivory in Carnivora

第5期
 
    06-10-17 Generic Scan Using AFLP Markers as a Means to Assess the Role of Directional Selection in the Divergence of Sympatric Whitefish Ecotypes
    06-10-17 Spiking of Contemporary Human Template DNA with Ancient DNA Extracts Induces Mutations Under PCR and Generates Nonauthentic Mitochondrial Se
    06-10-17 The Evolutionary History of Quorum-Sensing Systems in Bacteria
    06-10-17 False-Positive Selection Identified by ML-Based Methods: Examples from the Sig1 Gene of the Diatom Thalassiosira weissflogii and the tax Gen
    06-10-17 The Complete Mitochondrial DNA Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Highlights Distinctive Evolutionary Trends
    06-10-17 The Considerable Genome Size Variation of Hordeum Species (Poaceae) Is Linked to Phylogeny, Life Form, Ecology, and Speciation Rates
    06-10-17 Assembling an Arsenal: Origin and Evolution of the Snake Venom Proteome Inferred from Phylogenetic Analysis of Toxin Sequences
    06-10-17 Nucleotide Variability at the Acetyl Coenzyme A Carboxylase Gene and the Signature of Herbicide Selection in the Grass Weed Alopecurus myosu
    06-10-17 The Complete Mitochondrial Genome Sequence of the Spider Habronattus oregonensis Reveals Rearranged and Extremely Truncated tRNAs
    06-10-17 Origins, Lineage-Specific Expansions, and Multiple Losses of Tyrosine Kinases in Eukaryotes
    06-10-17 GFP-like Proteins as Ubiquitous Metazoan Superfamily: Evolution of Functional Features and Structural Complexity
    06-10-17 Positive Selection at Reproductive ADAM Genes with Potential Intercellular Binding Activity
    06-10-17 Evidence for a Complex Demographic History of Chimpanzees
    06-10-17 A Molecular Timeline for the Origin of Photosynthetic Eukaryotes
    06-10-17 Evidence of Positively Selected Sites in Mammalian -Defensins

第6期
 
    06-10-17 A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
    06-10-17 A Phylogenomic Study of Endosymbiotic Bacteria
    06-10-17 Bayesian Phylogenetic Model Selection Using Reversible Jump Markov Chain Monte Carlo
    06-10-17 Functional Microsatellite Polymorphism Associated with Divergent Social Structure in Vole Species
    06-10-17 Expected Rates and Modes of Evolution of Enhancer Sequences
    06-10-17 A Large Variation in the Rates of Synonymous Substitution for RNA Viruses and Its Relationship to a Diversity of Viral Infection and Transmi
    06-10-17 NUMTs in Sequenced Eukaryotic Genomes
    06-10-17 Stabilizing Selection on Behavior and Morphology Masks Positive Selection on the Signal in a Salamander Pheromone Signaling Complex
    06-10-17 Evolution of Sarcomeric Myosin Heavy Chain Genes: Evidence from Fish
    06-10-17 Microsatellites Within Genes: Structure, Function, and Evolution
    06-10-17 Two Patterns of Genome Organization in Mammals: the Chromosomal Distribution of Duplicate Genes in Human and Mouse
    06-10-17 Similar Rates but Different Modes of Sequence Evolution in Introns and at Exonic Silent Sites in Rodents: Evidence for Selectively Driven Co
    06-10-17 Molecular Evolution and Structure of -Actinin
    06-10-17 Endosymbiont Phylogenesis in the Dryophthoridae Weevils: Evidence for Bacterial Replacement
    06-10-17 Four New Avian Mitochondrial Genomes Help Get to Basic Evolutionary Questions in the Late Cretaceous

第7期
 
    06-10-18 Estimating Absolute Rates of Synonymous and Nonsynonymous Nucleotide Substitution in Order to Characterize Natural Selection and Date Specie
    06-10-18 Phylogenetic Analysis of the Vertebrate Galectin Family
    06-10-18 Phylogeny and Comparative Substitution Rates of Frogs Inferred from Sequences of Three Nuclear Genes
    06-10-18 Genome-Scale Phylogeny and the Detection of Systematic Biases
    06-10-18 Using Consensus Networks to Visualize Contradictory Evidence for Species Phylogeny
    06-10-18 Paralogy and Orthology in the Malvaceae rpb2 Gene Family: Investigation of Gene Duplication in Hibiscus
    06-10-18 Paralogy and Orthology in the Malvaceae rpb2 Gene Family: Investigation of Gene Duplication in Hibiscus
    06-10-18 Accelerated Rates of Intron Gain/Loss and Protein Evolution in Duplicate Genes in Human and Mouse Malaria Parasites
    06-10-18 Skip Navigation
    06-10-18 The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm
    06-10-18 Evolutionary Dynamics and Preferential Expression of Homeologous 18S-5.8S-26S Nuclear Ribosomal Genes in Natural and Artificial Glycine Allo
    06-10-18 Accelerated Rates of Intron Gain/Loss and Protein Evolution in Duplicate Genes in Human and Mouse Malaria Parasites
    06-10-18 Paralogy and Orthology in the Malvaceae rpb2 Gene Family: Investigation of Gene Duplication in Hibiscus
    06-10-18 Patterns of Microsatellite Variability Among X Chromosomes and Autosomes Indicate a High Frequency of Beneficial Mutations in Non-African D.
    06-10-18 Maternal and Paternal Lineages in Cross-Breeding Bovine Species. Has Wisent a Hybrid Origin?

第8期
 
    06-10-18 Differential Selection of Genes of Cucumber Mosaic Virus Subgroups
    06-10-18 Within- and Between-Individual Sequence Variation Among ITS1 Copies in the Meadow Grasshopper Chorthippus parallelus Indicates Frequent Intr
    06-10-18 Comparison of Diverse Protein Sequences of the Nuclear-Encoded Subunits of Cytochrome C Oxidase Suggests Conservation of Structure Underlies
    06-10-18 Early Duplication and Functional Diversification of the Opsin Gene Family in Insects
    06-10-18 A Universal Evolutionary Index for Amino Acid Changes
    06-10-18 Tom22', an 8-kDa trans-Site Receptor in Plants and Protozoans, Is a Conserved Feature of the TOM Complex That Appeared Early in the Evolutio
    06-10-18 IQPNNI: Moving Fast Through Tree Space and Stopping in Time
    06-10-18 Male-Biased Mutation Rate and Divergence in Autosomal, Z-Linked and W-Linked Introns of Chicken and Turkey
    06-10-18 The Northeast Indian Passageway: A Barrier or Corridor for Human Migrations?
    06-10-18 An Assessment of Accuracy, Error, and Conflict with Support Values from Genome-Scale Phylogenetic Data
    06-10-18 Complete Sequences of the Highly Rearranged Molluscan Mitochondrial Genomes of the Scaphopod Graptacme eborea and the Bivalve Mytilus edulis
    06-10-18 Rapid Evolution by Positive Darwinian Selection in the Extracellular Domain of the Abundant Lymphocyte Protein CD45 in Primates
    06-10-18 The Phylogenetic Relationship of Tetrapod, Coelacanth, and Lungfish Revealed by the Sequences of Forty-Four Nuclear Genes
    06-10-18 Intracellular Spheroid Bodies of Rhopalodia gibba Have Nitrogen-Fixing Apparatus of Cyanobacterial Origin
    06-10-18 Non-African Populations of Drosophila melanogaster Have a Unique Origin

第9期
 
    06-10-18 Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior
    06-10-18 Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments
    06-10-18 Modeling the Impact of DNA Methylation on the Evolution of BRCA1 in Mammals
    06-10-18 Adaptive Evolution of the Histone Fold Domain in Centromeric Histones
    06-10-18 Effects of Gene Expression on Molecular Evolution in Arabidopsis thaliana and Arabidopsis lyrata
    06-10-18 Evolution of the Transposable Element Pokey in the Ribosomal DNA of Species in the Subgenus Daphnia (Crustacea: Cladocera)
    06-10-18 Evolutionary Process of Amino Acid Biosynthesis in Corynebacterium at the Whole Genome Level
    06-10-18 The Cation/Ca2+ Exchanger Superfamily: Phylogenetic Analysis and Structural Implications
    06-10-18 Mechanisms Underlying the Evolution and Maintenance of Functionally Heterogeneous 18S rRNA Genes in Apicomplexans
    06-10-18 A Genome Phylogeny for Mitochondria Among -Proteobacteria and a Predominantly Eubacterial Ancestry of Yeast Nuclear Genes
    06-10-18 Origin and Maintenance of a Broad-Spectrum Disease Resistance Locus in Arabidopsis
    06-10-18 Variation of Female and Male Lineages in Sub-Saharan Populations: the Importance of Sociocultural Factors
    06-10-18 TAHRE, a Novel Telomeric Retrotransposon from Drosophila melanogaster, Reveals the Origin of Drosophila Telomeres
    06-10-18 Molecular Evolution and Population Genetics of Duplicated Accessory Gland Protein Genes in Drosophila
    06-10-18 On Inconsistency of the Neighbor-Joining, Least Squares, and Minimum Evolution Estimation When Substitution Processes Are Incorrectly Modele

第10期
 
    06-10-18 Bacteriophage Flux in Endosymbionts (Wolbachia): Infection Frequency, Lateral Transfer, and Recombination Rates
    06-10-18 Molecular and Mechanical Characterization of Aciniform Silk: Uniformity of Iterated Sequence Modules in a Novel Member of the Spider Silk Fi
    06-10-18 Precision and Accuracy of Divergence Time Estimates from STR and SNPSTR Variation
    06-10-18 NUPTs in Sequenced Eukaryotes and Their Genomic Organization in Relation to NUMTs
    06-10-18 An Evolutionary Model for Protein-Coding Regions with Conserved RNA Structure
    06-10-18 Evolutionary Genomics of Nuclear Receptors: From Twenty-Five Ancestral Genes to Derived Endocrine Systems
    06-10-18 The Malaria Parasite's Chloroquine Resistance Transporter is a Member of the Drug/Metabolite Transporter Superfamily
    06-10-18 Successful Lateral Transfer Requires Codon Usage Compatibility Between Foreign Genes and Recipient Genomes
    06-10-18 Evidence of Selection on the Domesticated ERVWE1 env Retroviral Element Involved in Placentation
    06-10-18 A Robust Measure of HIV-1 Population Turnover Within Chronically Infected Individuals
    06-10-18 African Haplogroup L mtDNA Sequences Show Violations of Clock-like Evolution
    06-10-18 Comparative Analysis of Plant and Animal Calcium Signal Transduction Element Using Plant Full-Length cDNA Data
    06-10-18 Ancestral Sequence Reconstruction in Primate Mitochondrial DNA: Compositional Bias and Effect on Functional Inference
    06-10-18 Chloroplast Phylogeny Indicates that Bryophytes Are Monophyletic
    06-10-18 Gene Expression, Synteny, and Local Similarity in Human Noncoding Mutation Rates

第11期
 
    07-04-04 Rhesus Macaque Class I Duplicon Structures, Organization, and Evolutio
    06-10-18 The Serine Repeat Antigen (SERA) Gene Family Phylogeny in Plasmodium: The Impact of GC Content and Reconciliation of Gene and Species Trees
    06-10-18 Molecular Claims of Gondwanan Age for Australian Agamid Lizards are Untenable
    06-10-18 Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests
    06-10-18 Identification of Chaetognaths as Protostomes Is Supported by the Analysis of Their Mitochondrial Genome
    06-10-18 Molecular Evolution of Sex-Biased Genes in Drosophila
    06-10-18 Microsatellite Variation and Evolutionary History of PCDHX/Y Gene Pair Within the Xq21.3/Yp11.2 Hominid-Specific Homology Block
    06-10-18 Recent Origin of a Hominoid-Specific Splice Form of Neuropsin, a Gene Involved in Learning and Memory
    06-10-18 Genetic Evidence for Unequal Effective Population Sizes of Human Females and Males
    06-10-18 Conservation and Coevolution in the Scale-Free Human Gene Coexpression Network
    06-10-18 The Molecular Basis of Adaptive Evolution of Squirrelfish Rhodopsins
    06-10-18 Rhesus Macaque Class I Duplicon Structures, Organization, and Evolution Within the Alpha Block of the Major Histocompatibility Complex
    06-10-18 Retroelement Dynamics and a Novel Type of Chordate Retrovirus-like Element in the Miniature Genome of the Tunicate Oikopleura dioica
    06-10-18 Long-Term Conservation of Six Duplicated Structural Genes in Cephalopod Mitochondrial Genomes
    06-10-18 PCR-Induced Sequence Alterations Hamper the Typing of Prehistoric Bone Samples for Diagnostic Achondroplasia Mutations

第12期
 
    07-04-04 Adaptive Evolution Drives the Diversification of Zinc-Finger Binding D
    06-10-18 A Broad Survey of Recombination in Animal Mitochondria
    06-10-18 Different Matrilineal Contributions to Genetic Structure of Ethnic Groups in the Silk Road Region in China
    06-10-18 Selective Expansion of the Newly Evolved Genomic Variants of Retrotransposon 1731 in the Drosophila Genomes
    06-10-18 Comparison of Three Methods for Estimating Rates of Synonymous and Nonsynonymous Nucleotide Substitutions
    06-10-18 Duplication and Diversifying Selection Among Termite Antifungal Peptides
    06-10-18 The Evolutionary Implications of knox-I Gene Duplications in Conifers: Correlated Evidence from Phylogeny, Gene Mapping, and Analysis of Fun
    06-10-18 Decreases in Activation Energy and Substrate Affinity in Cold-Adapted A4-Lactate Dehydrogenase: Evidence from the Antarctic Notothenioid Fis
    06-10-18 The Control of Copy Number of IS6110 in Mycobacterium tuberculosis
    06-10-18 Nonneutral Evolution of the Transcribed Pseudogene Makorin1-p1 in Mice
    06-10-18 Evolution of Vertebrate Genes Related to Prion and Shadoo Proteins—Clues from Comparative Genomic Analysis
    06-10-18 Treasurer's Report for January 1, 2003–December 31, 2004
    06-10-18 MBE Reviewers
    06-10-18 Evolutionary Pressures on Apicoplast Transit Peptides
    06-10-18 Editor's Report for 2003 and January to June, 2004